Alignments for a candidate for hisC in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9 (characterized, see rationale)
to candidate WP_018232412.1 THITHI_RS0107235 histidinol-phosphate transaminase

Query= uniprot:A0A2R7PAQ8
         (373 letters)



>NCBI__GCF_000378965.1:WP_018232412.1
          Length = 363

 Score =  291 bits (744), Expect = 3e-83
 Identities = 166/357 (46%), Positives = 226/357 (63%), Gaps = 14/357 (3%)

Query: 15  IRPDVRAMHSYVVQPSTGMLKMDAMENPFRLPAHLQAALGQRLGSVALNRYPGDRIADLK 74
           IRP +RA+ +Y V  +TG++K+DAMENP+  P  L  A  + L  VALNRYP  R   L 
Sbjct: 13  IRPGIRALAAYHVPDATGLVKLDAMENPYHWPRELVDAWLEVLRGVALNRYPDPRSPQLI 72

Query: 75  AALAQYAGMPEGYGIVLGNGSDELITLLALACAQPGTGQRATMLAPMPGFVMYPLSAQLQ 134
             L + AG+P    ++LGNGSDELI ++ +A A+PG      +++  P FVMY +     
Sbjct: 73  DTLRRVAGIPAEQSVILGNGSDELIQVIIMALAEPGR----VVMSVEPSFVMYRMITGYA 128

Query: 135 GLDFVGVPLTPDFELDEPAMLAAIGQHRPAITYIAYPNNPTATLWDEGAVQRIIDAAGAQ 194
            +++VGVPL  DF LD PA LAA+  HRPA+ ++AYPNNPT   +    V+ +I AA   
Sbjct: 129 DMNYVGVPLGEDFALDTPAFLAAMKAHRPAVVFLAYPNNPTGNRFSRPDVEAVIRAAP-- 186

Query: 195 GGIVVMDEAYQPFASRTWIDRMRAEPARNAHVLLMRTLSKFGLAGVRLGYLIGPSAFVSE 254
            G+VV+DEAY PFA     D   ++  R  ++++MRT+SK GLAG+RLGYL GP+A++SE
Sbjct: 187 -GLVVLDEAYAPFAD----DSFLSDLGRYPNLVVMRTVSKQGLAGLRLGYLCGPAAWLSE 241

Query: 255 IDKVRPPYNVSVLNCEAALFALEHAEVFAAQAAEIRVERATLIAALRQMPGVEKCWDSEA 314
            DKVR PYN++VL   +A FAL H  V   QAA IR +R TL  AL  +PGV   + SEA
Sbjct: 242 FDKVRLPYNINVLTQASADFALAHHHVLDEQAAAIRRDRETLARALAGLPGVTP-YPSEA 300

Query: 315 NMVLIRV--ADSAKAYEGMKNRKVLVKNVSTMHPLLANCLRLTVGNAEDNAQMLAAL 369
           N +L RV        ++G+K   VL+KN+S     L +CLR+TVG  E+N + LAAL
Sbjct: 301 NFILFRVPAGRGDAVFQGLKEAGVLIKNLSGQGGALTDCLRVTVGRPEENERFLAAL 357


Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 21
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 363
Length adjustment: 30
Effective length of query: 343
Effective length of database: 333
Effective search space:   114219
Effective search space used:   114219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate WP_018232412.1 THITHI_RS0107235 (histidinol-phosphate transaminase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.2057.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2057.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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