Alignments for a candidate for glnA in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align glutamate--ammonia ligase; EC 6.3.1.2 (characterized)
to candidate WP_018233065.1 THITHI_RS0110580 glutamate--ammonia ligase

Query= CharProtDB::CH_024014
         (469 letters)



>NCBI__GCF_000378965.1:WP_018233065.1
          Length = 469

 Score =  702 bits (1811), Expect = 0.0
 Identities = 331/469 (70%), Positives = 393/469 (83%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           MS   V+  + E+ VKFVD RFTD++GKEQHV++PAH +  + FE GKMFDGSSI GWKG
Sbjct: 1   MSPAEVIKTIKENGVKFVDFRFTDSRGKEQHVSVPAHSIEEDTFESGKMFDGSSIAGWKG 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRSTG 120
           INESDM+LMPD ++AV+DPFF + TL +RCD++EP T+QGYDR PRS+A+RAE YL STG
Sbjct: 61  INESDMILMPDPASAVMDPFFDEPTLNLRCDVVEPATMQGYDRCPRSLARRAEAYLASTG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWNSSTQYEGGNKGHRPAVKGGY 180
           IADT LFGPE EFF+FDD+++G+ ISG    +D  E +WNS   +EGGN GHRP VKGGY
Sbjct: 121 IADTALFGPENEFFVFDDVKWGNEISGCFFRVDSDEASWNSEKVFEGGNIGHRPTVKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPVPPVDS QD+RS MCL +E+MGL  E HHHEVATAGQ E+     T+T+KADE+QI K
Sbjct: 181 FPVPPVDSLQDLRSAMCLGLEEMGLTTEVHHHEVATAGQCEIGVGAATLTRKADEVQILK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIG 300
           YVV NVAH +GKTATFMPKP+ GDNGSGMH HMSLS++GVNLF+GD+Y GLSE ALYYIG
Sbjct: 241 YVVQNVAHNYGKTATFMPKPLVGDNGSGMHVHMSLSRDGVNLFSGDQYGGLSEMALYYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVSSPKARRIEVR 360
           GVIKHA+A+NA  N +TNSYKRLVPG+EAPVMLAYSARNRSASIRIP V +PK RRIEVR
Sbjct: 301 GVIKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPFVMNPKGRRIEVR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPD  ANPYL FAA++MAGLDGI+NKIHPGEAMDKNLYDLPPEE K+IPQV  +L++AL+
Sbjct: 361 FPDSTANPYLAFAAMMMAGLDGIQNKIHPGEAMDKNLYDLPPEEEKQIPQVCHALDQALD 420

Query: 421 ELDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
            LD DR FLKAGGVFTD+ IDAYI+L+ E+  R+RMT HPVE++LYYS+
Sbjct: 421 ALDKDRTFLKAGGVFTDDMIDAYISLKMEDVTRMRMTTHPVEYDLYYSL 469


Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 750
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_018233065.1 THITHI_RS0110580 (glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.30470.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30470.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.