Alignments for a candidate for hisH in Thioalkalivibrio thiocyanodenitrificans ARhD 1

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_018233367.1 THITHI_RS0112115 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_000378965.1:WP_018233367.1
          Length = 218

 Score =  205 bits (521), Expect = 6e-58
 Identities = 107/212 (50%), Positives = 133/212 (62%), Gaps = 2/212 (0%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEAD-VRISGEVADIRAADRVVLPGQGAMPDCMRS 59
           MN + VVDYGMGN+RSV +AL HVAP    V ++     I  A+RVV PGQGA  DCM +
Sbjct: 1   MNTVAVVDYGMGNVRSVVKALEHVAPAGTRVSLTDSPEVILDAERVVFPGQGAARDCMAA 60

Query: 60  LRESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEE-GDTPGLGLLPGKVVRFDLEGMRQD 118
           L   G+ +A+   +  +P  GVC+G Q+L D+SEE G T  LG+LPG+V  F  +     
Sbjct: 61  LTARGLDEALRRTAADRPFLGVCMGMQVLVDYSEENGGTRCLGVLPGQVRFFGEDLQEAG 120

Query: 119 DGSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFA 178
            G   K+P MGWN VHQ   HPLW  IA ++ FYFVHSY+    + A V   T YG  F 
Sbjct: 121 GGPRLKIPHMGWNQVHQIMEHPLWRDIAQDSRFYFVHSYHLQAGDPALVAATTEYGIRFT 180

Query: 179 CAVARDNIFATQFHPEKSASAGLQLYRNFVHW 210
            A+ARDNIFA Q HPEKSA+ GL L RNF+ W
Sbjct: 181 SAIARDNIFAIQCHPEKSAAPGLTLLRNFMRW 212


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 180
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 218
Length adjustment: 22
Effective length of query: 190
Effective length of database: 196
Effective search space:    37240
Effective search space used:    37240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_018233367.1 THITHI_RS0112115 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.10391.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10391.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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