Alignments for a candidate for ilvE in Thioalkalivibrio halophilus HL17

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_018947475.1 B1A74_RS06385 branched-chain amino acid transaminase

Query= BRENDA::O86428
         (307 letters)



>NCBI__GCF_001995255.1:WP_018947475.1
          Length = 306

 Score =  453 bits (1166), Expect = e-132
 Identities = 213/306 (69%), Positives = 257/306 (83%)

Query: 1   MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYDTPQGTAIFRLQAHTD 60
           MSMADRDGVIW DGE+V WRDA THVLTHTLHYGMGVFEGVRAY T  G AIFRL+ HT 
Sbjct: 1   MSMADRDGVIWLDGEMVPWRDAKTHVLTHTLHYGMGVFEGVRAYPTDHGPAIFRLEDHTR 60

Query: 61  RLFDSAHIMNMQIPYSRDEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHV 120
           RLF+SA I+ M +P++ + +N A +AA+ ENNLESAY+RPM F+GSEGMGLRA  L+VHV
Sbjct: 61  RLFNSAKILGMTLPFTAERLNRAQQAAITENNLESAYLRPMAFFGSEGMGLRADNLEVHV 120

Query: 121 IIAAWSWGAYMGEEALQQGIKVRTSSFTRHHVNISMTRAKSNGAYINSMLALQEAISGGA 180
           ++AAWSWG+Y+G++ ++ GI++RTSSF+RHHVN++M +AK+NG Y+NSM+ALQEA   G 
Sbjct: 121 MVAAWSWGSYLGDDGIENGIRIRTSSFSRHHVNVTMCKAKANGNYMNSMMALQEATRCGY 180

Query: 181 DEAMMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRNTILTLAAEHGFKLVEKR 240
           DEAM+LD EGYVAEGSGENIFII  GVIYTP++T+ L+GITR T++ LAAE GF++VEKR
Sbjct: 181 DEAMLLDTEGYVAEGSGENIFIISGGVIYTPDLTSALDGITRRTVIELAAEEGFRVVEKR 240

Query: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDGRKIGAGRRGPVTEKLQKAYFDLVSGKTEAHA 300
           ITRDEVYIADEAFFTGTAAEVTPIREVD R IG G RGP+TE LQ  YFD+V G+   H 
Sbjct: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDDRPIGTGSRGPITELLQSRYFDVVHGRDSRHQ 300

Query: 301 EWRTLV 306
           +W T V
Sbjct: 301 DWLTYV 306


Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 403
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 306
Length adjustment: 27
Effective length of query: 280
Effective length of database: 279
Effective search space:    78120
Effective search space used:    78120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_018947475.1 B1A74_RS06385 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.28327.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28327.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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