Alignments for a candidate for argG in Hydrogenovibrio halophilus DSM 15072

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_019894082.1 A377_RS0100415 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000384235.1:WP_019894082.1
          Length = 402

 Score =  506 bits (1303), Expect = e-148
 Identities = 249/397 (62%), Positives = 304/397 (76%), Gaps = 3/397 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTSII KWL++ Y  EV+ FTADIGQGEEVE AR KA   G  +    DL
Sbjct: 6   KVVLAYSGGLDTSIIAKWLQDAYDCEVVTFTADIGQGEEVEPARAKAQAMGIKEIYIEDL 65

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEF RDFVFPMMRA A+YEG Y LG+SIARPLI+K LV IA+E GA+A+AHGATGKGND
Sbjct: 66  REEFARDFVFPMMRANAIYEGEYRLGSSIARPLISKRLVEIAQETGADAVAHGATGKGND 125

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK--PYSMDANLL 179
           QVRFEL AYAL PD+KVIAPWREW    R++++AYAE H IP+   + K  PYSMDANLL
Sbjct: 126 QVRFELNAYALMPDVKVIAPWREWDLLSREKLMAYAEKHNIPIENKKGKKSPYSMDANLL 185

Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239
           HISYEGG++EDP  EP + M+  +  PE APD P Y+E+ +  GD VA++GE +SPA ++
Sbjct: 186 HISYEGGIIEDPANEPEEAMWLWSVAPEAAPDTPTYMELSYEHGDIVAIDGEAMSPATVM 245

Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299
           + LN++GG +G+GR D+VENRFVGMK+RG YETPGGTI+  A RA+ESLTLDR   H +D
Sbjct: 246 EHLNKVGGANGIGRDDLVENRFVGMKARGCYETPGGTIMLRAHRAMESLTLDRNAAHLKD 305

Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYR 359
            L PKYAE++Y GFW++PERE LQA  D   + V+G  RLKLYKGNV VVGR +  SL+ 
Sbjct: 306 ELMPKYAEMIYNGFWFSPEREMLQALIDQSQKDVSGTVRLKLYKGNVTVVGRWSENSLFD 365

Query: 360 QDLVSFDEAGG-YDQKDAEGFIKIQALRLRVRALVER 395
           + + +F+E GG YD KDAEGFIK+ ALRLR  A   R
Sbjct: 366 EAIATFEEDGGAYDHKDAEGFIKLNALRLRTAAKKRR 402


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 524
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 402
Length adjustment: 31
Effective length of query: 369
Effective length of database: 371
Effective search space:   136899
Effective search space used:   136899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_019894082.1 A377_RS0100415 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.4239.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4239.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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