Alignments for a candidate for thrB in Hydrogenovibrio halophilus DSM 15072

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (uncharacterized)
to candidate WP_019895100.1 A377_RS0104995 homoserine kinase

Query= curated2:Q9RAM6
         (319 letters)



>NCBI__GCF_000384235.1:WP_019895100.1
          Length = 308

 Score =  293 bits (751), Expect = 3e-84
 Identities = 144/302 (47%), Positives = 196/302 (64%)

Query: 1   MSVFTTVSFEQMQQWLKGYDLGELLDLQGIASGITNTNYFVTTDNGRYVLTLFEEHSAEE 60
           MSV+T V+   +Q +L  YDLGEL D QGI++GI NTNYFV T  GR+VLT+FE+H+ +E
Sbjct: 1   MSVYTQVTRTDLQTFLTRYDLGELTDFQGISAGIENTNYFVDTTRGRFVLTIFEQHTLDE 60

Query: 61  LPNFLDLMTHLAERGIPCPHPVKNNAGRALGELNGKPAALVSCLAGRSLDNPMPQHCAAI 120
           LP FL++M  +AE  IP  HP+ +  GR L  L  KPAALV  L G  LDNP P+ C  +
Sbjct: 61  LPYFLNIMAFMAEHAIPTAHPMADREGRYLQTLKDKPAALVERLQGADLDNPTPRQCEVM 120

Query: 121 GEVLARMHIAGASFKAGMSNLRGQEWRIATAAKVAPFLDEENHRMLDAQLEFERTFDTRR 180
           GE LA+ H+AG  F    +N R   W   T +++   L  E   ++  ++ F++  D   
Sbjct: 121 GEWLAKFHLAGQDFDDFRANDRDLAWAETTYSRLQTKLPAEETALIADEIAFQQQTDWSL 180

Query: 181 LPRGVIHADLFRDNVLMDGDKVGGVIDFYYACHDALLYDIAIAVNDWCVNADCTLDAVRV 240
           LP  VIHADLF DN L DGD++ G+ID YYAC+  +LYD+A+ +NDWC   D TLD+ +V
Sbjct: 181 LPVSVIHADLFCDNALFDGDELAGIIDLYYACNGPMLYDLAVMINDWCRRPDQTLDSDKV 240

Query: 241 RAFLDAYHAIRPLTGEEHAAWPGMLRVAAMRFWLSRLNDLYFPQAGELTHAKDPAYFERI 300
              L AY  +RPL+  EH+AW  + R+ A+RF+LSRL D Y P+ GE+T  KDP  F ++
Sbjct: 241 VRTLQAYETVRPLSEAEHSAWLSVQRMGALRFYLSRLQDQYQPREGEMTQIKDPQVFGKL 300

Query: 301 LK 302
           L+
Sbjct: 301 LQ 302


Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 293
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 308
Length adjustment: 27
Effective length of query: 292
Effective length of database: 281
Effective search space:    82052
Effective search space used:    82052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)

Align candidate WP_019895100.1 A377_RS0104995 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.18525.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18525.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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