Alignments for a candidate for dapB in Methyloferula stellata AR4T

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate WP_020174341.1 A3OQ_RS0105370 4-hydroxy-tetrahydrodipicolinate reductase

Query= BRENDA::Q2YJN7
         (268 letters)



>NCBI__GCF_000385335.1:WP_020174341.1
          Length = 269

 Score =  344 bits (883), Expect = e-99
 Identities = 180/266 (67%), Positives = 209/266 (78%), Gaps = 1/266 (0%)

Query: 1   MGLVVVGAGGRMGQTLIRTIQSIEGAKLVGAIERSGSPFLGKDAGEVTGIGTLGVAITDD 60
           M LVV GA GRMG+ L++ I   EGA LV A+E+  S  +G+DAG + G G +GV I+ D
Sbjct: 4   MRLVVAGASGRMGRALVQLIHETEGASLVAALEQPDSIAIGQDAGLLAGCGRMGVDISGD 63

Query: 61  PLPVFAKAHGVLDFTSPAASVEFAGLAAQARIVHVIGTTGCSAEDDEKIRAAARHATIVK 120
            L   + A G+LDFTSP ASVE AGLAAQARIVHVIGTTG S ED  ++ AAARHA IVK
Sbjct: 64  ALKAASIADGILDFTSPRASVEMAGLAAQARIVHVIGTTGFSPEDQARLDAAARHAVIVK 123

Query: 121 SGNMSLGVNLLSVLVQKAAEALGPEDFDIEILEMHHRHKVDAPSGTALLLGEAAARGRDI 180
           SGNMSLGVNLL+ LV+K A  LGP D+DIEI+EMHHR KVDAPSGTALLLG +AARGRD+
Sbjct: 124 SGNMSLGVNLLAALVEKVARTLGP-DYDIEIVEMHHRLKVDAPSGTALLLGASAARGRDV 182

Query: 181 ALADNSVRVRDGYTGPRETGAIGFATLRGGSVIGDHSVILAGTGERVVLSHHAEDRSIFA 240
            L D+SVR RDG+TG RE GAIGFA LRGG+V+GDHSVI AG GER+ L+H AEDR IFA
Sbjct: 183 PLDDHSVRGRDGHTGVREKGAIGFAALRGGTVVGDHSVIFAGPGERIELTHKAEDRRIFA 242

Query: 241 RGAIKAALWAHGKKPGLYSMLDVLGL 266
           RGA++AALW   +KPGLYSM DVL L
Sbjct: 243 RGALQAALWGRSRKPGLYSMTDVLDL 268


Lambda     K      H
   0.318    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 280
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 269
Length adjustment: 25
Effective length of query: 243
Effective length of database: 244
Effective search space:    59292
Effective search space used:    59292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_020174341.1 A3OQ_RS0105370 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.24490.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24490.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.