Alignments for a candidate for carA in Methyloferula stellata AR4T

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_020174793.1 A3OQ_RS0107680 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000385335.1:WP_020174793.1
          Length = 396

 Score =  370 bits (949), Expect = e-107
 Identities = 202/382 (52%), Positives = 243/382 (63%), Gaps = 15/382 (3%)

Query: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
           I +ALL+L DGT   G   G  G AVGEV FNT+MTGYQEILTDPSY+ QIVT T+PHIG
Sbjct: 18  IATALLILADGTVIEGMGFGFIGEAVGEVCFNTAMTGYQEILTDPSYTGQIVTFTFPHIG 77

Query: 62  NVGTNDADEESSQVHAQGLVIRDLPLIA-SNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
           NVG N+ D E         VI   P+   SN R+ E  + +LKR  I+ ++ IDTR LT 
Sbjct: 78  NVGANEEDVEGLVSSGACGVIVHAPVTGPSNHRSREHFNDWLKRRGIIGLSGIDTRALTA 137

Query: 121 LLREKGAQNGCIIAGDNPDAALALE----KARAFPGLNGMDLAKEVTTAEAYSWTQGSWT 176
            +REKG  N  I    +PD A  LE    KA  +PGL GMDL  E +  E   W   +W 
Sbjct: 138 FIREKGMPNAVI--AHSPDGAFDLEGLKAKAAGWPGLVGMDLVPEASAPERREWEGTTW- 194

Query: 177 LTGGLPEAK--KEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPD 234
               LPE    +     F VVA D+G K NILR+L D GC +T+VPA TSAE++L + PD
Sbjct: 195 ----LPEIGYGQSGHNKFRVVAVDYGIKSNILRLLADVGCAVTVVPATTSAEEILALKPD 250

Query: 235 GIFLSNGPGDPAPCD-YAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGG 293
           G+FLSNGPGDPA    YA+  IQ  +   IP FGICLGHQ+LALA GAKT+KM  GHHG 
Sbjct: 251 GVFLSNGPGDPAATGAYAVPVIQALIAQKIPTFGICLGHQMLALAVGAKTMKMHQGHHGA 310

Query: 294 NHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGH 353
           NHPV D     V I + NHGFAVD A+LP+N + TH+SLFDG+  G   TD+PAF+ Q H
Sbjct: 311 NHPVMDFTTGKVEIVSMNHGFAVDPASLPSNAKETHRSLFDGSNCGFELTDRPAFAVQYH 370

Query: 354 PEASPGPHDAAPLFDHFIELIE 375
           PEASPGP D+  LF  F  L+E
Sbjct: 371 PEASPGPRDSHYLFARFAALME 392


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 476
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 396
Length adjustment: 30
Effective length of query: 352
Effective length of database: 366
Effective search space:   128832
Effective search space used:   128832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_020174793.1 A3OQ_RS0107680 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.5911.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5911.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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