Alignments for a candidate for trpA in Methyloferula stellata AR4T

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_020175119.1 A3OQ_RS0109325 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_000385335.1:WP_020175119.1
          Length = 278

 Score =  225 bits (573), Expect = 9e-64
 Identities = 125/245 (51%), Positives = 158/245 (64%), Gaps = 1/245 (0%)

Query: 2   SRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMADG 61
           +RID+RF  LKA  R  L+ FV AGDP     + ++ AL  AGAD+IE+G+PF+DPMADG
Sbjct: 3   TRIDQRFQTLKAEGRAALVTFVMAGDPDLATSLEILTALPKAGADVIEVGMPFTDPMADG 62

Query: 62  PVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQA 121
           P IQ A  RA+  G  LA VL  VA FR+ D  TPIVLMGY NPI  +G ARF  +A  A
Sbjct: 63  PAIQQAGLRALHAGTTLAKVLTLVADFRRSDEATPIVLMGYYNPIYIYGVARFLTDAKAA 122

Query: 122 GVDGVLLVDCPLEESAVL-QPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFAG 180
           GVDG+++VD P EE   L  P  +AGL  I LA PTT+  R+  +     GF+YYVS  G
Sbjct: 123 GVDGLIVVDLPPEEDRELCLPTLEAGLAFIRLATPTTDDKRLPTVLAHTSGFVYYVSITG 182

Query: 181 ITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRLA 240
           ITGAA      +A+ V  ++     PVAVGFG+++A SA AIA  AD VV+GSA+V+ L 
Sbjct: 183 ITGAAVPDYNQVASAVRRIKGHTDLPVAVGFGVKNAQSAAAIAREADGVVVGSAIVEVLR 242

Query: 241 GATDA 245
            + DA
Sbjct: 243 ASLDA 247


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 278
Length adjustment: 25
Effective length of query: 241
Effective length of database: 253
Effective search space:    60973
Effective search space used:    60973
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_020175119.1 A3OQ_RS0109325 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.20716.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20716.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.