Alignments for a candidate for trpE in Methyloferula stellata AR4T

Align Anthranilate synthase component 1; AS; ASI; EC 4.1.3.27 (characterized)
to candidate WP_020175711.1 A3OQ_RS0112390 anthranilate synthase component I

Query= SwissProt::P20579
         (493 letters)



>NCBI__GCF_000385335.1:WP_020175711.1
          Length = 505

 Score =  380 bits (976), Expect = e-110
 Identities = 222/475 (46%), Positives = 291/475 (61%), Gaps = 15/475 (3%)

Query: 19  LACETLADFDTPLSIYLKLAD--QPNSYLLESVQGGEKWGRYSMIGLPSRTVMRVHGYHV 76
           ++ + +AD +TP+S +LKL+   Q   +LLES++GG   GRYSMIGL    + R  G   
Sbjct: 21  VSTKLIADLETPISAFLKLSAGRQGLIFLLESIEGGVVRGRYSMIGLDPDVLWRAQGDKA 80

Query: 77  SI----LHDGVEVESHDVEDPLAFVESFKDRYKVADIPGLPRFNGGLVGYFGYDCVRYVE 132
            I    L D  + +  D   PL  + +F    ++     LP    G+ GY GYD VR +E
Sbjct: 81  EINRQALKDRTDFKPCDAP-PLESLRAFVAESRIDAGEELPPMAAGVFGYLGYDMVRQME 139

Query: 133 KRLGVSPNPDPLGVPDILLMVSDAVVVFDNLAGKMHAIVLVDPAE----EQAFEQGQARL 188
                   PDP+GVPD  +M    ++VFD +  +M  +  V PA+    + A+E    R+
Sbjct: 140 HL--APAKPDPIGVPDAFMMRPTVMLVFDTVKDEMTLVTPVRPADGVSAKSAYEAAIERI 197

Query: 189 QGLLETLRQPITPRRGLDLSGPQAAEPEFRSSYTREDYENAVGRIKEYILAGDCMQVVPS 248
             ++ TL  P++            A P+  +  TR  + + V R K YI AGD  QVV S
Sbjct: 198 DAIVLTLEGPLSHEGSAADPYLLTAPPQSNTDETR--FYDMVERAKAYIRAGDIFQVVLS 255

Query: 249 QRMSIDFKAAPIDLYRALRCFNPTPYMYFFNFGDFHVVGSSPEVLVRVEDNLVTVRPIAG 308
           QR +  F      LYRALR  NP P++ + +F  F +V SSPE+LVRV D  VT+RPIAG
Sbjct: 256 QRFTTPFALPAFALYRALRRVNPAPFLCYLDFDAFQIVCSSPEILVRVRDGKVTIRPIAG 315

Query: 309 TRPRGATEEADRALEDDLLSDDKEIAEHLMLIDLGRNDVGRVSSTGSVRLTEKMVIERYS 368
           TR RG T   D ALE +LL+D+KE AEHLML+DLGRNDVGRV+  G+V +T++  IERYS
Sbjct: 316 TRWRGKTSAEDLALEAELLADEKECAEHLMLLDLGRNDVGRVAEIGTVEVTDRFSIERYS 375

Query: 369 NVMHIVSNVAGQLREGLTAMDALRAILPAGTLSGAPKIRAMEIIDELEPVKRGVYGGAVG 428
           +VMHIVSNV G+L     A+DAL A  PAGT+SGAPKIRAMEIIDELE  KRG+Y G +G
Sbjct: 376 HVMHIVSNVEGRLDASHDAIDALCAGFPAGTVSGAPKIRAMEIIDELEVDKRGIYAGCIG 435

Query: 429 YFAWNGNMDTAIAIRTAVINDGELHVQAGGGIVADSVPALEWEETINKRRAMFRA 483
           YF  +G MDT I +RT+V+ DG +HVQAG GIV DS PA E  E +NK +A FRA
Sbjct: 436 YFGASGEMDTCIVLRTSVVKDGFMHVQAGAGIVYDSDPAYEQRECVNKAKAQFRA 490


Lambda     K      H
   0.320    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 658
Number of extensions: 30
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 505
Length adjustment: 34
Effective length of query: 459
Effective length of database: 471
Effective search space:   216189
Effective search space used:   216189
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_020175711.1 A3OQ_RS0112390 (anthranilate synthase component I)
to HMM TIGR00564 (trpE: anthranilate synthase component I (EC 4.1.3.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.15958.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15958.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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