Alignments for a candidate for asp-kinase in Methyloferula stellata AR4T

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_020177124.1 A3OQ_RS0119490 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_000385335.1:WP_020177124.1
          Length = 412

 Score =  398 bits (1023), Expect = e-115
 Identities = 225/412 (54%), Positives = 289/412 (70%), Gaps = 10/412 (2%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MA +V KFGGTSV  V+RI  VA  V++  + G DI VVVSAMSG+TN L+D  +  S  
Sbjct: 1   MARLVMKFGGTSVADVDRIRNVARHVQREVEAGYDIAVVVSAMSGKTNELVDWCRVASRF 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
             PRE D +V+ GEQVT  LLA+ L   G+PA S+ G QV ILT  AH  ARI  ID   
Sbjct: 61  YDPREYDAVVAAGEQVTAGLLAIVLQDMGIPARSWQGWQVPILTSDAHGSARIADIDGSA 120

Query: 121 IQRDIKAGR-VVVVAGFQGV-DEKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGV 178
           I +  +  + V V+AGFQG+  E G I+TLGRGGSDT+ VA+AAA+KA+ C IYTDVDGV
Sbjct: 121 IFKAFEERKEVAVIAGFQGLHQETGRISTLGRGGSDTSAVAIAAAIKAERCDIYTDVDGV 180

Query: 179 YTTDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSFQE---- 234
           YTTDPR+VAKA+RLD++ FEEMLEMASLG+KVLQ+R+VE A  Y V   V  SF +    
Sbjct: 181 YTTDPRIVAKARRLDRVAFEEMLEMASLGAKVLQVRSVELAMVYKVKTFVRSSFDDPLDP 240

Query: 235 GPGTLITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISAANVEVDMI 294
            PGTLI  DEE+ +EQ +++GIAF+R+EA++T+R V D PGVA  I  P++ AN+ VDMI
Sbjct: 241 KPGTLI-CDEEDILEQQVVTGIAFSREEAQITLRRVADNPGVAAAIFMPLAEANINVDMI 299

Query: 295 VQNVAHDNT--TDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSIVGVGMRS 352
           +Q V  DNT  TD TFTV   D+  A  +L+    ++G     G +++ K+S +GVGMRS
Sbjct: 300 IQ-VVSDNTVATDITFTVPVVDFERARAILEKAQPQIGYGTLQGASDVVKISAIGVGMRS 358

Query: 353 HAGVASRMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 404
           H GVA+R F+ALA++ INI+ I+TSEIK SV+IE  Y ELAVR LH+ + LD
Sbjct: 359 HPGVAARAFKALAEKGINIRAITTSEIKFSVLIEAAYTELAVRTLHSLYGLD 410


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 421
Number of extensions: 16
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 412
Length adjustment: 31
Effective length of query: 381
Effective length of database: 381
Effective search space:   145161
Effective search space used:   145161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_020177124.1 A3OQ_RS0119490 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.17992.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17992.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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