Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_020177190.1 A3OQ_RS0119825 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_000385335.1:WP_020177190.1
Length = 1242
Score = 1514 bits (3921), Expect = 0.0
Identities = 777/1226 (63%), Positives = 932/1226 (76%), Gaps = 11/1226 (0%)
Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAI 67
LRA E+ILVLDG MGTMIQ ++ EADFR ERFADWP DL+GNNDLLVL++P I AI
Sbjct: 10 LRAAAREKILVLDGAMGTMIQQHKFTEADFRAERFADWPRDLRGNNDLLVLTQPHAIRAI 69
Query: 68 HNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPR 127
H AY +AGADII TNTF+ST IA ADY ME L E+NF AA+LA A E R +
Sbjct: 70 HLAYCDAGADIIATNTFSSTRIAQADYGMERLVPELNFEAARLACEAAHESEERHGRR-H 128
Query: 128 YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTL 187
+VAG LGPTNRTASISPDVN+P FR ++FD L AY E+ +AL+EGG D++++ET+FDTL
Sbjct: 129 FVAGALGPTNRTASISPDVNNPGFRAVSFDELRDAYAEAARALIEGGVDILIVETIFDTL 188
Query: 188 NAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC 247
NAKAA+ + F+ +G +LP+MISGTITD SGRTLSGQT AF+NSLRHA+ T GLNC
Sbjct: 189 NAKAALVGIDQVFDDMGKKLPVMISGTITDLSGRTLSGQTPTAFWNSLRHAKPFTIGLNC 248
Query: 248 ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFLNIV 307
ALG E+R ++ E+SRIA+ YV A+PNAGLPN FG YD + MA I E+A++G +NIV
Sbjct: 249 ALGAREMRAHLAEISRIADTYVCAYPNAGLPNEFGLYDESPEYMASLIGEFAESGLVNIV 308
Query: 308 GGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTNVTG 367
GGCCGTTP HI A+++ V G+APRK+PEI RLSGLEP + ++ FVNVGERTNVTG
Sbjct: 309 GGCCGTTPPHIHAIAKRVVGIAPRKIPEIVPLLRLSGLEPFALTKEIRFVNVGERTNVTG 368
Query: 368 SAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIA 427
SAKF++LIKE +S ALDVAR QV GAQ+IDINMDEG+LD+E AMV FLNL+A EPDIA
Sbjct: 369 SAKFRKLIKEGDFSAALDVARDQVVAGAQVIDINMDEGLLDSEKAMVDFLNLVAAEPDIA 428
Query: 428 RVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDE 487
RVP+M+DSSK+ VIE GLKCIQGK IVNSISMKEG + F+ AKL+RRYGAAVVVMAFDE
Sbjct: 429 RVPVMVDSSKFQVIESGLKCIQGKPIVNSISMKEGEEKFVEVAKLVRRYGAAVVVMAFDE 488
Query: 488 QGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACE 547
QGQADT ARKIEIC RAYKILTE VGFPPEDIIFDPNIFAVATGIEEHNNY DFI A
Sbjct: 489 QGQADTCARKIEICSRAYKILTETVGFPPEDIIFDPNIFAVATGIEEHNNYGVDFIEATR 548
Query: 548 DIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDD 607
++++ P ISGGVSN+SFSFRGN+ VR+A+H+VFLY+AI GMDMGIVNAGQL++Y+D
Sbjct: 549 EVRKRFPLVHISGGVSNLSFSFRGNEMVRQAMHSVFLYHAISAGMDMGIVNAGQLSVYED 608
Query: 608 LPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKRLEYSL 667
+ ELRDA EDV+LNRR DGTERLL LAE+++G T+ + WRS V KRLE++L
Sbjct: 609 IDPELRDACEDVVLNRRPDGTERLLALAERFKGQGTERA--EKDLVWRSEPVEKRLEHAL 666
Query: 668 VKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQ 727
V GITEFI+ DTEEAR ++TRP++VIEGPLM GMNVVGDLFG GKMFLPQVVKSARVMKQ
Sbjct: 667 VNGITEFIDADTEEARAKSTRPLDVIEGPLMAGMNVVGDLFGSGKMFLPQVVKSARVMKQ 726
Query: 728 AVAYLEPFIEASKEQG-----KTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGV 782
AVAYL P++E K + K GK+++ATVKGDVHDIGKNIVGVVL CNNYEI+DLGV
Sbjct: 727 AVAYLMPYMEEEKRKNGGAERKNAGKILMATVKGDVHDIGKNIVGVVLACNNYEIIDLGV 786
Query: 783 MVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAHT 842
MVP KIL A+ D IGLSGLITPSLDEM VA EMER+GF++PLLIGGATTS+ HT
Sbjct: 787 MVPCAKILDVARTEKVDAIGLSGLITPSLDEMCFVASEMEREGFSMPLLIGGATTSRVHT 846
Query: 843 AVKIEQNYS-GPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRT 901
AVKI NY+ G TVYV +ASR VGVV L S R ++ + EYE V H R +
Sbjct: 847 AVKINPNYTKGQTVYVTDASRAVGVVQNLFSPAARGPYIEAIKTEYENVAEAHMRNEAEK 906
Query: 902 PPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEA-SIETLRNYIDWTPFFMTWSLAGKY 960
L AR N DW AY PP LG + + L YIDWTPFF TW + G+Y
Sbjct: 907 NRQPLPRARANALKLDWAAYEPPHPTFLGTRIFRTYDVAELVPYIDWTPFFQTWEMRGRY 966
Query: 961 PRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRT 1020
P IL D G AQ+LF DA ML ++ E +P+ V+G +PAN +GDDI++Y E+R+
Sbjct: 967 PDILSDPEKGAAAQQLFDDAQAMLARIVEEHWFDPKAVIGFWPANAIGDDIKLYTGESRS 1026
Query: 1021 HVINVSHHLRQQ-TEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQ 1079
V+ H LRQQ +++ G N ++D++AP S K DY+G F VT G E+ +AD F
Sbjct: 1027 EVLATFHTLRQQLSKRDGRPNIAMSDYIAPVESLKPDYLGGFVVTAGAREEKIADRFAKA 1086
Query: 1080 HDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGY 1139
+DDY IMVKALADR+AEAFAE +HERVRK +W YAP+E L+ +ELI E Y+GIRPAPGY
Sbjct: 1087 NDDYGSIMVKALADRIAEAFAERMHERVRKEFWAYAPDEALAPDELITEPYRGIRPAPGY 1146
Query: 1140 PACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQ 1199
PA P+HTEKAT++ LLE E+ G+ LTESFAMWPG+SVSG Y SHPD++Y+ VA+I+RDQ
Sbjct: 1147 PAQPDHTEKATLFRLLEPERRIGVTLTESFAMWPGSSVSGLYLSHPDARYFGVAKIERDQ 1206
Query: 1200 VEDYARRKGMSVTEVERWLAPNLGYD 1225
VEDYA RKGM E+ERWLAP L YD
Sbjct: 1207 VEDYALRKGMDFAEMERWLAPILNYD 1232
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3675
Number of extensions: 155
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1242
Length adjustment: 48
Effective length of query: 1179
Effective length of database: 1194
Effective search space: 1407726
Effective search space used: 1407726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate WP_020177190.1 A3OQ_RS0119825 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.18988.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18988.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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