Alignments for a candidate for thrC in Methylosarcina fibrata AML-C10

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_020562611.1 A3OW_RS0106470 threonine synthase

Query= BRENDA::O66740
         (352 letters)



>NCBI__GCF_000372865.1:WP_020562611.1
          Length = 364

 Score =  407 bits (1045), Expect = e-118
 Identities = 195/354 (55%), Positives = 267/354 (75%), Gaps = 7/354 (1%)

Query: 4   WQGIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFK 63
           + G+I++Y+  LPV  +T I++L EGNTPLI   N+ R  G +  I++K+EGLNPTGSFK
Sbjct: 7   YTGLIERYRDRLPVSASTRIISLNEGNTPLIRLQNIPRLTGKEVDIHVKFEGLNPTGSFK 66

Query: 64  DRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAM 123
           DRGMT+A++KAVE G RA+ICASTGNTSASAAAYAARAG++A+V++P+G +A+GKL+Q +
Sbjct: 67  DRGMTMAVTKAVEEGSRAIICASTGNTSASAAAYAARAGIKAFVIIPEGKIALGKLAQTL 126

Query: 124 IYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDY 183
           +Y A ++ I+G FD  + +V++I ++ PV IVNS+NP+RI+GQKTA+FEI D LG+APDY
Sbjct: 127 MYDATIIQIRGNFDQGMTLVKEIADHAPVTIVNSINPFRIDGQKTASFEIIDALGDAPDY 186

Query: 184 HFIPVGNAGNITAYWKGFKIYYEEGK-----ITKLPRMMGWQAEGAAPIVKGYPIKNPQT 238
           H +PVGNAGNITAYWKG+K Y  + +       K P M G+QA GAAP + G+PI++P+T
Sbjct: 187 HCLPVGNAGNITAYWKGYKEYSTDSETHQAVTRKRPVMCGYQAAGAAPFLAGHPIEHPET 246

Query: 239 IATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAG 298
           +ATAI+IGNP SW  A  A +ESGG  D  +D EIL A K+++  EG+FCEPASA S+AG
Sbjct: 247 VATAIRIGNPQSWDYAWAAQKESGGWFDKFTDEEILAAQKMLSQYEGIFCEPASATSLAG 306

Query: 299 LIKLVREGFFKGGEVVTCTLTGNGLKDPDTAIKVC--EEPITVPPDFDEVVKVL 350
            +K +R G    G  + CTLTG GLKDPDTAI+ C   +P+T+  + + V + +
Sbjct: 307 ALKDIRSGKIPEGSRIVCTLTGVGLKDPDTAIRQCAATQPLTIEAELNAVKRAI 360


Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 454
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 364
Length adjustment: 29
Effective length of query: 323
Effective length of database: 335
Effective search space:   108205
Effective search space used:   108205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_020562611.1 A3OW_RS0106470 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.6542.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6542.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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