Alignments for a candidate for prs in Methylosarcina fibrata AML-C10

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_020562721.1 A3OW_RS0107025 ribose-phosphate diphosphokinase

Query= SwissProt::O52958
         (280 letters)



>NCBI__GCF_000372865.1:WP_020562721.1
          Length = 292

 Score =  129 bits (324), Expect = 7e-35
 Identities = 81/262 (30%), Positives = 133/262 (50%), Gaps = 5/262 (1%)

Query: 20  AKILEVEIKRFPDGEKYVRVMGNGDEATVVSSTFYPQDEKIVELLLLGDALREKGFEKLK 79
           A + EV + RFPDGE +V +  +  E  V   +    ++K+VELLL     +  G ++L 
Sbjct: 22  APVAEVYLHRFPDGESFVELPASLPEHVVFCRSLNQPNDKLVELLLGASTAKAMGAKRLS 81

Query: 80  LVVPYFAYSRQDRVTKDGEPISVRAVMRALGIYYEELYIFDTH---NPETLRFFPGKA-V 135
           LV PY  Y RQD   + G  +S + + R L   ++E+   D H    P   +  P K  V
Sbjct: 82  LVAPYLCYMRQDFANRPGVAVSQKIIGRLLADLFDEVLTVDPHLHRTPTLAQAIPCKTPV 141

Query: 136 NVSPARVIGEYFREKLGDGLVLAPDKGALERARAVAEVLGLEYSHFEKRRISPTEVEMHP 195
            +S +  I  +   +    L+L PD  + +   ++ +  G +Y+   K+R+   E+E+  
Sbjct: 142 TLSASDAIAGFLAGQFEQALLLGPDSESEQWVASIGKKTGFDYAVATKKRLGDKEIELTL 201

Query: 196 VDVDVKGKNVLIVDDIISTGGTMVRAAELLRKLGAKKIYVSATHGVFAEGAIERVSRA-V 254
            + D +G+ V+IVDD+ STG T+  A+  L+   A  +Y   TH VF   A  ++ +A V
Sbjct: 202 PERDYRGQPVVIVDDMASTGRTLASASRSLQAQAAPAVYAVVTHAVFCGDAEAQIRQAGV 261

Query: 255 DELAVTNTIPTPVSRISIVPEL 276
             +  T++I  P SRI + P L
Sbjct: 262 QAVWSTDSINHPTSRIRLGPLL 283


Lambda     K      H
   0.319    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 179
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 292
Length adjustment: 26
Effective length of query: 254
Effective length of database: 266
Effective search space:    67564
Effective search space used:    67564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_020562721.1 A3OW_RS0107025 (ribose-phosphate diphosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.4426.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4426.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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