Alignments for a candidate for argG in Methylosarcina fibrata AML-C10

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_020563848.1 A3OW_RS0112860 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000372865.1:WP_020563848.1
          Length = 404

 Score =  496 bits (1276), Expect = e-145
 Identities = 246/394 (62%), Positives = 300/394 (76%), Gaps = 4/394 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTS+ILKWL++ Y  EV+ FTAD+GQGEEVE AR KA   G  +    DL
Sbjct: 6   KVVLAYSGGLDTSVILKWLQDVYSCEVVTFTADLGQGEEVEPARAKAQALGIKEIYIDDL 65

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEF RDFVFPM RA  +YEG YLLGTSIARPLIAK L+ IA E GA AI+HGATGKGND
Sbjct: 66  REEFARDFVFPMFRANTIYEGEYLLGTSIARPLIAKRLIEIANETGAAAISHGATGKGND 125

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK--PYSMDANLL 179
           QVRFEL AYAL+PDI++IAPWREW    R+ ++ YAE HGIPV + + K  PYSMDANLL
Sbjct: 126 QVRFELGAYALRPDIRIIAPWREWHLTSRQTLLDYAEKHGIPVEMKKGKASPYSMDANLL 185

Query: 180 HISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALL 239
           HISYEG VLEDPWAEP + M+R T  PE APD   Y+E+ +  GD V ++    SPA +L
Sbjct: 186 HISYEGRVLEDPWAEPEEDMWRWTVSPEAAPDKATYIELTYRRGDIVTIDDVPHSPAEVL 245

Query: 240 QRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRD 299
            +LN+I G +G+GR+DIVENR+VGMKSRG YETP GT++  A RA+ESLTLDREV H +D
Sbjct: 246 AKLNKIAGSNGIGRLDIVENRYVGMKSRGCYETPAGTVMLKAHRAIESLTLDREVAHLKD 305

Query: 300 MLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPK-SLY 358
            L P+YA L+Y G+W++PER+ LQ   D    +V G  RLKLYKGNV VVGRK+   SL+
Sbjct: 306 ELMPRYASLIYNGYWWSPERKMLQQMIDASQENVNGKVRLKLYKGNVMVVGRKSDSDSLF 365

Query: 359 RQDLVSFDEAGG-YDQKDAEGFIKIQALRLRVRA 391
            + + +F+E GG Y+QKDAEGFIK+ ALR+R+ A
Sbjct: 366 DESIATFEEDGGAYNQKDAEGFIKLNALRMRIAA 399


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 481
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 404
Length adjustment: 31
Effective length of query: 369
Effective length of database: 373
Effective search space:   137637
Effective search space used:   137637
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_020563848.1 A3OW_RS0112860 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.6513.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6513.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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