Alignments for a candidate for trpD_2 in Methylosarcina fibrata AML-C10

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_020565440.1 A3OW_RS0121070 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000372865.1:WP_020565440.1
          Length = 339

 Score =  321 bits (823), Expect = 1e-92
 Identities = 170/334 (50%), Positives = 227/334 (67%), Gaps = 1/334 (0%)

Query: 6   QQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMR 65
           QQALQ+ ++ + +  +EM  +MRQIM G  +DA +   L  LR K ET+ E+  AA V+R
Sbjct: 4   QQALQKLLDKQNLTAEEMHSVMRQIMSGGATDAQIGGFLVALRCKGETVDEMVSAAEVIR 63

Query: 66  EFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSA 125
           E + +V V    H+VD  GTGGDG++TFNIST   FV AA G +VAKHGNRSVSS  GSA
Sbjct: 64  ELAGKVPVVGD-HVVDTCGTGGDGANTFNISTACAFVVAAAGGQVAKHGNRSVSSCCGSA 122

Query: 126 DALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPL 185
           D LEA G  +EL  EQVA  +   G+GF++AP HH AM+     RREMG+RT+FN+LGPL
Sbjct: 123 DVLEAAGVNLELTAEQVARCVNDIGVGFLFAPKHHGAMRHTIGPRREMGIRTLFNLLGPL 182

Query: 186 TNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDG 245
            NPAG+PN L+GVF  + V   A VL++LG+   LVV   DG+DE+S+ A + + EL++G
Sbjct: 183 ANPAGAPNQLIGVFAKEWVKPLAEVLKKLGSRHVLVVSAEDGLDEISIAAPSHIAELKEG 242

Query: 246 QVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALYVA 305
           +V  Y V PE FG+  ++   L + DA  S  M+  VLDN PGPA DIV LNAGAA+Y A
Sbjct: 243 KVSVYSVTPEQFGLKRASLAELTIRDAETSLLMMKAVLDNRPGPARDIVVLNAGAAIYAA 302

Query: 306 GVADSIADGIVRARQVLADGSARACLDAYVAFTQ 339
            + DS+A G+ +A +V+A G+ARA LDA V +++
Sbjct: 303 NLTDSLAAGMDKADRVIAGGAARAKLDALVDYSK 336


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 306
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 339
Length adjustment: 29
Effective length of query: 316
Effective length of database: 310
Effective search space:    97960
Effective search space used:    97960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_020565440.1 A3OW_RS0121070 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.31019.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31019.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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