Alignments for a candidate for serA in Methylosarcina fibrata AML-C10

Align D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized, see rationale)
to candidate WP_020565839.1 A3OW_RS0123135 phosphoglycerate dehydrogenase

Query= uniprot:Q6LWW6
         (523 letters)



>NCBI__GCF_000372865.1:WP_020565839.1
          Length = 527

 Score =  387 bits (994), Expect = e-112
 Identities = 216/527 (40%), Positives = 322/527 (61%), Gaps = 8/527 (1%)

Query: 1   MSKILITDPLHESAVEIL-KQAG-EVEVATGLTVEELKLKIKDVDALVIRSGTTATREII 58
           M KILI+D L E+ +  L +Q+G +V + TGL  E L   I D DAL+IRS T  T +++
Sbjct: 1   MKKILISDKLSEAGINYLNEQSGIQVHIETGLKEEGLCNIIGDYDALLIRSDTQVTPKVL 60

Query: 59  EASENLKVIARAGVGVDNVDLDAATEKGIVVVNAPDASSISVAELLFGMMLAAARNIPQA 118
           +A++ LK+I RAG+GVDNVD+  ATE GI+V+N PDA++ + AEL    M++ +R++P A
Sbjct: 61  QAAKKLKLIGRAGIGVDNVDIPMATELGIIVMNTPDANATTTAELAIAHMMSLSRHLPTA 120

Query: 119 TASIKSGKWDRKSFKGMEIYGKTLGIVGLGRIGQQVAKRAQAFGMTIVAYDPYIPEDVAS 178
             S+++GKW+R    G EI  KTL I+G G IG+ VA+R     M ++AYDP++  ++  
Sbjct: 121 DRSVRAGKWERSKLMGSEIAHKTLAILGFGTIGRIVAQRGLGLKMKVIAYDPFVAPEIFQ 180

Query: 179 ELGIKLLTVDELCTVSDFITLHVPLTPKTKHMIGKEQIALMKSNMVIMNCARGGLIDEAA 238
           +LG++ + +DEL + +D++TLH PL  KT+++IGK Q  +MK   +++NCARGGLI+E A
Sbjct: 181 DLGVESVGLDELVSRADYLTLHCPLIEKTRNIIGKPQFDIMKKGAMLINCARGGLINEEA 240

Query: 239 LYDALNSGKIKAAALDVFEQEPPKESPLLTLNNLIGTPHQGASTEEAQLSAGTIVAEQTV 298
           LYDAL SGKI  AALDV++ EPP  SPLL L+N++ TPH GAST EAQ++    +A Q V
Sbjct: 241 LYDALKSGKIAGAALDVYDNEPPAGSPLLELDNIVFTPHLGASTAEAQVAVSVEIARQAV 300

Query: 299 KILKGESAENVVNLPMVPTEKMKKLKPYMVLAEKMGSMAIQYLDNSIELLEITYMGGLAK 358
             LK   A N +NLP    E++KK   Y+ LA  +G +        IE LE+   G  A+
Sbjct: 301 TFLKTGEAINALNLPRQSAEEIKKSFEYVNLATILGKVLAGLATQPIEKLEVALFGRAAE 360

Query: 359 EKTEILKRSFLKGILAPILLAGVNLVNAPVIAKSRNIKIAEGTMSE-SDYGNSIKISAKG 417
                +    L GIL+      VN VNA  IAK + I + E    E  DY + IK++  G
Sbjct: 361 VDVRPVSVGALVGILSGQFSTPVNRVNAENIAKRQGISLIESKTEEPQDYISLIKLTGHG 420

Query: 418 ENDEISIIGSI---EHNEVVFREINGYRMDIKPEGTICIIKHIDRPGMVGKVGVLLGEHG 474
               IS+ G +    H  +V   IN + +++ PEGT+ + +H D+PG++  +  +LG   
Sbjct: 421 GQHSISLSGVLLGGRHPRLVC--INHFDIEVVPEGTLVVTQHNDKPGVISAISAVLGNAN 478

Query: 475 INIAGMQVGRREPGGHSIMFLDIDHMISDEVLDEIRKMENVRAAKSI 521
           INI  MQVG  +    ++  + +   +SD +L ++  +  V+ A  I
Sbjct: 479 INITRMQVGTADDQQQAMAVISVSEPLSDALLQQLCGVPAVQKATQI 525


Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 701
Number of extensions: 34
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 527
Length adjustment: 35
Effective length of query: 488
Effective length of database: 492
Effective search space:   240096
Effective search space used:   240096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_020565839.1 A3OW_RS0123135 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.27015.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27015.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.