Alignments for a candidate for ilvD in Roseburia faecis M72

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_022045849.1 M72_RS11020 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_001406815.1:WP_022045849.1
          Length = 557

 Score =  552 bits (1422), Expect = e-161
 Identities = 286/553 (51%), Positives = 394/553 (71%), Gaps = 7/553 (1%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M SD  + G+Q+AP RSL    G T ++ +KP +GI +SY +IVPGH+++ ++  AVK G
Sbjct: 1   MISDNARSGMQQAPARSLFNALGFTAEELKKPMVGIVSSYNEIVPGHMNIDKIVNAVKLG 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           V  AGGV   F  +A+CDGIAM H GMKYSL +R+++AD+ E MA+AH  D LV++P CD
Sbjct: 61  VAEAGGVPVVFPAIAVCDGIAMGHVGMKYSLVTRDLIADSTECMAIAHQFDALVMVPNCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           K VPG+LMAAARL++P + V+GGPML G  +G+K  L +++E VG+ +AG M+ED++ E 
Sbjct: 121 KNVPGLLMAAARLNLPTVFVSGGPMLAGHVQGKKRSLSSMFEAVGSYAAGTMTEDDVLEY 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           E   CP   SC+G++TAN+M CLTEALGM L G  T  AV S + ++A+ +G  +++M +
Sbjct: 181 ENKVCPTCGSCSGMYTANSMNCLTEALGMGLRGNGTIPAVYSERIKLAKHAGMAVMDMFR 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300
           +N+    I+++E+  NA+ VD+ALG STN+ LH+PAIA EI G + ++   + +S   P+
Sbjct: 241 KNICARDIITKESILNALTVDMALGCSTNSMLHLPAIAHEI-GFDFDISFANPISEKTPN 299

Query: 301 IASISPAGEHMMLDLDRAGGIPAVLKTLED--HINRECVTCTGRTVQENIENVKVGHRDV 358
           +  ++PAG   M DL+ AGG+ AV+K L D   ++ +C+T TG+T+ ENI N    + +V
Sbjct: 300 LCHLAPAGPTYMEDLNEAGGVYAVMKELADIGLLHTDCMTVTGKTIGENIANAVNRNPEV 359

Query: 359 IRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGG 418
           IRP+D P    GGLA+L+GNLAP GSVVK+ AV ++MMVHEGPA+VF  E++ + AI GG
Sbjct: 360 IRPVDHPYSKTGGLAVLKGNLAPDGSVVKRSAVVDEMMVHEGPARVFECEEDAIAAIKGG 419

Query: 419 RIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVGHV 477
           +I EGDV+VIRYEGPKGGPGMREMLNPTSAIAGMGL   VALITDGRFSG +RG  +GHV
Sbjct: 420 KIVEGDVVVIRYEGPKGGPGMREMLNPTSAIAGMGLGSSVALITDGRFSGASRGASIGHV 479

Query: 478 SPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPR--RSVKGWLARY 535
           SPEA   GP+A V +GDII+I+IP   L VD+S  E+  R ++  +PR  +   G+L RY
Sbjct: 480 SPEAAVGGPIALVEEGDIIKINIPEMTLNVDVSDEEMAAR-RAKWQPREPKVTTGYLKRY 538

Query: 536 RKLAGSADTGAVL 548
             L  S + GAVL
Sbjct: 539 SALVTSGNRGAVL 551


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 956
Number of extensions: 53
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 557
Length adjustment: 36
Effective length of query: 513
Effective length of database: 521
Effective search space:   267273
Effective search space used:   267273
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_022045849.1 M72_RS11020 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.22702.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22702.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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