Alignments for a candidate for argG in Roseburia faecis M72

Align argininosuccinate synthase (EC 6.3.4.5) (characterized)
to candidate WP_022046408.1 M72_RS12780 argininosuccinate synthase

Query= BRENDA::A4I066
         (418 letters)



>NCBI__GCF_001406815.1:WP_022046408.1
          Length = 409

 Score =  506 bits (1303), Expect = e-148
 Identities = 250/401 (62%), Positives = 306/401 (76%), Gaps = 8/401 (1%)

Query: 13  KPRVVLAYSGGLDTSVIIPWLKENYDYEVIACCANVGQGAGEIDGLEEKAKKSGASKLYL 72
           K +VVLAYSGGLDT+ IIPWLKE Y YEV+ CC N GQG  E+DGLEE+AK SGASKLY+
Sbjct: 2   KEKVVLAYSGGLDTTAIIPWLKETYGYEVVCCCINCGQGE-ELDGLEERAKLSGASKLYI 60

Query: 73  LDLREEYVTDYIFPTLKAGATYEGKYMLGTSHARPLIAKHLVEVAHKEGAVAICHGATGK 132
            D+ +E+  DYI P ++AGA YE KY+LGT+ ARP IAK LVE+A KE AVAICHGATGK
Sbjct: 61  EDITDEFCDDYIVPCVQAGAVYEHKYLLGTAMARPGIAKKLVEIARKENAVAICHGATGK 120

Query: 133 GNDQVRFELAVMALDPSLKCVAPWRE--WNIKSREDAIDYAEAHGVPVPCTKSDLYSRDR 190
           GNDQ+RFEL + AL P +K +APWR+  W + SRE  I Y +AHG+ +P      YSRDR
Sbjct: 121 GNDQIRFELGIKALAPDIKIIAPWRDDKWQMDSREAEIAYCKAHGIDLPFGTDQSYSRDR 180

Query: 191 NLWHISHEGMDLEDPANEPAYARLLRLCNTVEKAPDEAEYVTVQFEKGIPVAVNGRKMSS 250
           NLWHISHEG++LE+PANEP Y  LL L  + EKAPDE EYVT+ FEKG+P  VNG++M  
Sbjct: 181 NLWHISHEGLELENPANEPNYDHLLVLGVSPEKAPDEGEYVTMTFEKGVPKTVNGKEMKV 240

Query: 251 VELVEELNALGGKHAIGIEDIVEDRLVGMKSRGVYETPAGTILYKALDMLESLCLDRDTQ 310
            +++ ELN LGGKH +GI DIVE+R+VGMKSRGVYETP GTIL +A D LE L LDRDT 
Sbjct: 241 SDIIRELNRLGGKHGVGIIDIVENRVVGMKSRGVYETPGGTILMEAHDQLEELVLDRDTL 300

Query: 311 SFKRQSAVRFSELVYDGKWFTPLRESMSAMFDQMAETVTGEATLKLYKGNLVPAGAQSPY 370
           S K++   R + +VY+GKWFTPLRE++ A      + VTGE   KLYKGN++ AG  SPY
Sbjct: 301 SAKKEMGNRLANVVYEGKWFTPLREAIQAFVTSTQKYVTGEVKFKLYKGNIIKAGTTSPY 360

Query: 371 SLYNKNIASF--GDSQHLYNHHDAEGFIRLFGLPLRVRSMM 409
           SLY++++ASF  GD    Y+HHDA+GFI LFGLPL+VR+MM
Sbjct: 361 SLYSESLASFTTGDQ---YDHHDADGFITLFGLPLKVRAMM 398


Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 553
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 409
Length adjustment: 31
Effective length of query: 387
Effective length of database: 378
Effective search space:   146286
Effective search space used:   146286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_022046408.1 M72_RS12780 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.20564.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20564.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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