Alignments for a candidate for proA in Roseburia faecis M72

Align glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) (characterized)
to candidate WP_022046601.1 M72_RS08250 glutamate-5-semialdehyde dehydrogenase

Query= BRENDA::A7Y114
         (420 letters)



>NCBI__GCF_001406815.1:WP_022046601.1
          Length = 420

 Score =  389 bits (1000), Expect = e-113
 Identities = 201/399 (50%), Positives = 267/399 (66%), Gaps = 4/399 (1%)

Query: 26  ILSDKEKNDALHHIADVLERDFEAILAANEKDLRNGREQGFTEAFMDRLSLSQERIRDFA 85
           +L    KN  L   AD L    + IL AN  D+  GRE+   +  +DRL L  +R+   A
Sbjct: 21  MLDTDTKNRTLELAADALMAHEQEILEANAIDMERGRERNMPQGLLDRLKLDHDRLLGMA 80

Query: 86  QGLRDVAELEDPTGKKLSDWTLENGLQVEKVTVPLGVIGMIYEARPNVTVDATGLALKSG 145
            GLR VA+LEDP G+ +S     NGL + KV V +GV+G+I+EARPNVT DA GL  KSG
Sbjct: 81  DGLRQVAKLEDPIGEVMSMRKRPNGLIIGKVRVAIGVVGIIFEARPNVTSDAFGLCFKSG 140

Query: 146 NAIVLKGGSSAINSNQAIVEVIHKALAETKIPQESVQFIASTDRAATNQLFTMKEHVDVL 205
           N  +LKGGS AI+SN AIV  + +AL    IP+ ++  I STDR  TN    MK++VD+L
Sbjct: 141 NCAILKGGSDAIHSNIAIVSAMQEALRRMNIPKGALSLIESTDRETTNAFMKMKDYVDLL 200

Query: 206 IPRGGGKLIQAVVENATVPVLETGVGNCHIYIDKDADVEKAISILVNAKTDRPAVCNAAE 265
           IPRGG  LIQ+VV NAT+PV+ETG GNCH+Y+D+ AD E A++I+ NAKT R  VCNA E
Sbjct: 201 IPRGGRGLIQSVVNNATIPVIETGTGNCHVYVDQFADQEMAVNIIKNAKTQRIGVCNACE 260

Query: 266 TLIVHKDWLAQHSDELISALKKENIHVHGDEHVLTII----PDAVPAGEDDWKNEYLSTD 321
           +++VH+    +   +L +ALK+ ++ + GD + +  +    P    A E+DW  EYL   
Sbjct: 261 SIVVHRAIAKEFLPKLYAALKEYDVEMRGDSYAVECLGPDQPLVKDATEEDWGTEYLDYI 320

Query: 322 IAVKAVDDLVDAIAHIETYGTKHSEAIVTENQEAADKFLAIVDAAAIYHNASTRFTDGGA 381
           ++VK VD L +AIAHI  Y T HSEAI+T+N + A +FL  +D+A +Y NASTRF+DG  
Sbjct: 321 MSVKIVDSLDEAIAHINKYNTSHSEAIITKNYDVAQRFLNEIDSACVYVNASTRFSDGNE 380

Query: 382 LGFGAEIGISTQKLHARGPMGLPALTTVKFLMKGTGQIR 420
            G GAEIGISTQKLHARGPMGL ALT+ K+++ G GQ+R
Sbjct: 381 FGLGAEIGISTQKLHARGPMGLEALTSYKYIIYGNGQVR 419


Lambda     K      H
   0.315    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 440
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 420
Length adjustment: 32
Effective length of query: 388
Effective length of database: 388
Effective search space:   150544
Effective search space used:   150544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)

Align candidate WP_022046601.1 M72_RS08250 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.4850.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4850.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.