Alignments for a candidate for carA in Hippea alviniae EP5-r

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_022669966.1 G415_RS0102275 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000420385.1:WP_022669966.1
          Length = 374

 Score =  337 bits (864), Expect = 3e-97
 Identities = 177/376 (47%), Positives = 245/376 (65%), Gaps = 4/376 (1%)

Query: 2   IKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIG 61
           +K A+LVLE+G  F G A+G  G+AVGEVVFNT+M+GYQEILTDPSY  QIVT+TY  IG
Sbjct: 1   MKKAVLVLENGEIFEGFALGTIGTAVGEVVFNTAMSGYQEILTDPSYKGQIVTMTYTQIG 60

Query: 62  NVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRL 121
           N G N  DEES + + +G V+++  +I SNFR+ E L  YLKRHNIVAI  IDTRKLT++
Sbjct: 61  NYGLNRDDEESDKPYVEGFVVKEGSVITSNFRSEESLDEYLKRHNIVAIEGIDTRKLTKM 120

Query: 122 LREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGL 181
           LR KG+  G I + +  D    L++  +   + G D+ K V+T + Y +  G +     +
Sbjct: 121 LRVKGSLIGAISSTETID---ELKRRVSSFEIVGKDMVKFVSTKQPYRFDDGIFRFGYEI 177

Query: 182 PEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNG 241
            + K+  + P  VV  DFG K+NILR LV+ G  + +V A TS ++V  +NPD +F SNG
Sbjct: 178 RKIKRVLDKPKKVVVIDFGVKKNILRYLVEVGFDVYVVGAYTSYDEVKGLNPDALFFSNG 237

Query: 242 PGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVE 301
           PGDP   D       + +  +   FGIC GHQ++A A   K  KMKFGHHGGNHPVKD++
Sbjct: 238 PGDPRGIDEKWIKEYRKMAENFVCFGICFGHQIIARAFDVKIYKMKFGHHGGNHPVKDLD 297

Query: 302 KNVVMITAQNHGFAVDEATL-PANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360
            + + +TAQNH +AVD+  L     ++T+ +L DG+++G+   + P  S Q HPEASPGP
Sbjct: 298 SDKIFVTAQNHNYAVDDKDLVEKGFKITYINLNDGSVEGMMHKELPLMSVQYHPEASPGP 357

Query: 361 HDAAPLFDHFIELIEQ 376
           HDA  LF+ F  ++++
Sbjct: 358 HDAEYLFERFALMVKE 373


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 398
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 374
Length adjustment: 30
Effective length of query: 352
Effective length of database: 344
Effective search space:   121088
Effective search space used:   121088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_022669966.1 G415_RS0102275 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.26202.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26202.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.