Alignments for a candidate for leuA in Methylohalobius crimeensis 10Ki

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate WP_022947189.1 H035_RS0101200 2-isopropylmalate synthase

Query= BRENDA::Q9JZG1
         (517 letters)



>NCBI__GCF_000421465.1:WP_022947189.1
          Length = 514

 Score =  653 bits (1684), Expect = 0.0
 Identities = 329/508 (64%), Positives = 407/508 (80%)

Query: 5   NRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIA 64
           +++IIFDTTLRDGEQSPGA+M +EEKIR+A+ LE+L VD+IEAGF AAS GDF+AV A++
Sbjct: 3   DKLIIFDTTLRDGEQSPGASMNREEKIRIAKALERLRVDVIEAGFPAASGGDFDAVKAVS 62

Query: 65  KTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAA 124
           + + +S VC L+RA++ DI +AGEA+A A + RIHTFIATSPIHME+KL+M P QV+E A
Sbjct: 63  QAVGESAVCGLARALDTDIDRAGEALAVARRSRIHTFIATSPIHMEHKLRMTPDQVVERA 122

Query: 125 VKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEE 184
           V AV+ AR YTDDVEFS EDA RSE DFL  I  AVI AGATTINIPDTVGYS+P     
Sbjct: 123 VAAVQRARRYTDDVEFSPEDAGRSEEDFLCRIIEAVIAAGATTINIPDTVGYSLPPAFGA 182

Query: 185 FFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVE 244
               L  + PN  K V+S HCHNDLGLAVANSLAA+  GARQVECT+NGLGERAGNA++E
Sbjct: 183 MIGRLRERIPNADKAVFSVHCHNDLGLAVANSLAAVMSGARQVECTINGLGERAGNAALE 242

Query: 245 EIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQD 304
           E+VMA+K R D F  +TGI+T +IVP SKLVS+ITG+PVQPNKAIVGANAF+HESGIHQD
Sbjct: 243 EVVMAVKTRQDAFPCDTGINTQEIVPCSKLVSSITGFPVQPNKAIVGANAFAHESGIHQD 302

Query: 305 GVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFK 364
           GVLK RETYEIM AE VGW+ NR+ LGK SGRNAF+T++ +LGIE E+EEALN AFARFK
Sbjct: 303 GVLKSRETYEIMRAEDVGWSANRMVLGKHSGRNAFRTRMRELGIEFEAEEALNEAFARFK 362

Query: 365 ELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRA 424
           +LADKK EIF+EDL AL+S+++    AE  K I+  + ++TGE PRA +V  + GEEK +
Sbjct: 363 DLADKKHEIFEEDLQALISEQIYESEAERVKLIALHVCSDTGETPRAQVVLKVDGEEKTS 422

Query: 425 SATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGAD 484
            + GSG VDA  KAIES+  +GA+L +YSVN++T GT++QGE +VRL RG R+VNG GAD
Sbjct: 423 ESEGSGVVDATLKAIESLLATGASLLLYSVNSITTGTDAQGEVTVRLERGGRIVNGLGAD 482

Query: 485 TDVLVATAKAYLSALSKLEFSAAKPKAQ 512
           TD+++A+AKAYL+A+ KL  SA +   Q
Sbjct: 483 TDIVIASAKAYLNAVDKLLSSAGRKHPQ 510


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 702
Number of extensions: 21
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 514
Length adjustment: 35
Effective length of query: 482
Effective length of database: 479
Effective search space:   230878
Effective search space used:   230878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_022947189.1 H035_RS0101200 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.9288.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9288.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.