Alignments for a candidate for dapC in Methylohalobius crimeensis 10Ki

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_022947853.1 H035_RS0104740 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_000421465.1:WP_022947853.1
          Length = 358

 Score =  374 bits (961), Expect = e-108
 Identities = 191/360 (53%), Positives = 242/360 (67%), Gaps = 3/360 (0%)

Query: 3   QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 62
           +++NFS+GPA+LP  VL +A++E+ DW G G SVME+SHRG  F Q+AE AE D R+LL 
Sbjct: 2   RVYNFSAGPAVLPEAVLVRAREEMLDWRGSGMSVMEMSHRGPHFKQIAETAEADLRELLG 61

Query: 63  VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK 122
           V  +Y  LF  GG  GQFAA+P+N+L DK   +YV  G W+  A  EAK+Y    +  A 
Sbjct: 62  VSEDYHCLFLQGGATGQFAAIPMNLLDDKRKMNYVVTGSWSKKAAAEAKQYGEVRIA-AT 120

Query: 123 VTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSR 182
              +    +     W++     Y+HY  NETI G+     P+  AD  +  D SS  LSR
Sbjct: 121 GEAENFTTIPDPASWRVDPEGVYLHYTTNETIGGVEFPFVPE--ADCPLVTDMSSDFLSR 178

Query: 183 PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 242
           P+ V+R+G+IYAGAQKN+GPAG+ +VIVR+DLL       PSI DY    + GSM NTPP
Sbjct: 179 PVAVNRFGLIYAGAQKNMGPAGIVVVIVRKDLLRDPLPGTPSIWDYRKQVEAGSMLNTPP 238

Query: 243 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNVPF 302
           T+ WYL GLV +WL+  GG+  +++ N +K+ELLYG I+ SDFYRN V    RSRMNVPF
Sbjct: 239 TYNWYLVGLVLEWLREQGGLVAIERRNIEKSELLYGAIEASDFYRNPVDPRYRSRMNVPF 298

Query: 303 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 362
            LAD ALD  FL+E+   GL  LKGHR VGGMRASIYNAMP+EGVKAL DFM EFERR+G
Sbjct: 299 TLADPALDATFLKEASERGLVNLKGHRSVGGMRASIYNAMPIEGVKALVDFMQEFERRYG 358


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 358
Length adjustment: 29
Effective length of query: 333
Effective length of database: 329
Effective search space:   109557
Effective search space used:   109557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_022947853.1 H035_RS0104740 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.31445.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31445.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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