Alignments for a candidate for cmutase in Methylohalobius crimeensis 10Ki

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_022947855.1 H035_RS0104750 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000421465.1:WP_022947855.1
          Length = 361

 Score =  388 bits (997), Expect = e-112
 Identities = 198/365 (54%), Positives = 256/365 (70%), Gaps = 4/365 (1%)

Query: 1   MSEADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWV 60
           M   D+L+ LR RID++D  +L L++ERA  A +VA VK A+    ++  FYRP+REA V
Sbjct: 1   MKTGDKLRELRRRIDAIDAELLRLLNERAELALQVAEVKRAA---GDDDCFYRPDREAEV 57

Query: 61  LKHIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVI 120
           L+ I   N GPLD++   R+FREIMS+CLALE+PL+VA+LGPEGTF+Q AA KHFG ++ 
Sbjct: 58  LRRIKAKNPGPLDDDVAVRIFREIMSACLALEKPLQVAFLGPEGTFTQQAAYKHFGQAIA 117

Query: 121 SKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHL 180
           + P+ A+DE+FR V  GA  +GVVPVENSTEG V HTLDSFL   ++I GEV LRIHH+L
Sbjct: 118 ALPLPAVDEIFRAVAGGACGYGVVPVENSTEGVVTHTLDSFLNTSLLISGEVVLRIHHNL 177

Query: 181 LVGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIA 240
           +     +   I  ++SH QSLAQCR+WLD   P+ +R  VSSNA+ A+      NSAAIA
Sbjct: 178 M-SRRAELQAIEEVFSHQQSLAQCREWLDRFLPHAKRTPVSSNAEGARLAAIVPNSAAIA 236

Query: 241 GDMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELL 300
           G++AA+LY L  L   IED P N+TRFL+IG Q V PTGDDKTS++VS RN PGAL+ LL
Sbjct: 237 GEVAARLYELDVLESSIEDDPDNTTRFLVIGKQPVGPTGDDKTSLVVSTRNAPGALYRLL 296

Query: 301 MPFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSY 360
            PF  + I +++IE+RPSR G W YVFFID  GH  D  +   L  +   A  +K LGSY
Sbjct: 297 QPFADHRISMSKIESRPSRQGMWEYVFFIDIEGHRDDVRVTEALTALEERAQMVKWLGSY 356

Query: 361 PKAVL 365
           P+AV+
Sbjct: 357 PRAVI 361


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 379
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 361
Length adjustment: 29
Effective length of query: 336
Effective length of database: 332
Effective search space:   111552
Effective search space used:   111552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_022947855.1 H035_RS0104750 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.32243.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32243.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.