Alignments for a candidate for ilvE in Methylohalobius crimeensis 10Ki

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_022948950.1 H035_RS0110590 branched-chain amino acid transaminase

Query= reanno::psRCH2:GFF445
         (307 letters)



>NCBI__GCF_000421465.1:WP_022948950.1
          Length = 309

 Score =  421 bits (1083), Expect = e-123
 Identities = 201/302 (66%), Positives = 241/302 (79%)

Query: 1   MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYNTPDGTAIFRLQAHTD 60
           M M D+DG IW DGE + WR+A  HVLTHTLHYG GVFEG+RAY    GTAIFRLQ HTD
Sbjct: 1   MPMHDKDGEIWLDGEWLPWREAKVHVLTHTLHYGAGVFEGLRAYYGQRGTAIFRLQEHTD 60

Query: 61  RLFDSAHIMNMPMPYSKEEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHV 120
           RLF SAHIM M +PY KE +N     AV  N L+SAYIRPM FYG+EGMGLRA  L++HV
Sbjct: 61  RLFRSAHIMRMTIPYPKETLNRIQCEAVFRNGLDSAYIRPMCFYGAEGMGLRADNLELHV 120

Query: 121 IVAAWHWGAYMGDEALELGIKVRTSSFTRHHVNITMTRAKSNGAYINSMLALQEAISGGA 180
           +VAAW WGAY+G E LE GI+VRTSSFTR+H+N  M +AK+NG Y+NSMLALQEA+  G 
Sbjct: 121 MVAAWEWGAYLGAENLEKGIRVRTSSFTRNHINSLMCKAKANGNYVNSMLALQEAVDTGF 180

Query: 181 DEALMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRGTVLTLAAEHGLKIVEKR 240
           DEAL+LD +G +AEGSGENIF+++ G +YTP++T+ L GITR TV+T+A E GL+++EKR
Sbjct: 181 DEALLLDHQGNIAEGSGENIFLVRSGKLYTPDLTSVLEGITRDTVMTIAREMGLEVIEKR 240

Query: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDGRAIGIGRRGPITEKLQKAYFDLVTGKTDAHA 300
           +TRD+VY+ADEAFFTGTAAE+TPIREVDGR IG G RGP+TEKLQ  YFD V G+   H 
Sbjct: 241 LTRDDVYVADEAFFTGTAAEITPIREVDGRQIGGGTRGPVTEKLQSLYFDYVHGRRSDHP 300

Query: 301 EW 302
           EW
Sbjct: 301 EW 302


Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 309
Length adjustment: 27
Effective length of query: 280
Effective length of database: 282
Effective search space:    78960
Effective search space used:    78960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_022948950.1 H035_RS0110590 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.4490.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4490.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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