Alignments for a candidate for ilvD in Methylohalobius crimeensis 10Ki

Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_022949045.1 H035_RS0111095 dihydroxy-acid dehydratase

Query= BRENDA::A0A481UJA7
         (614 letters)



>NCBI__GCF_000421465.1:WP_022949045.1
          Length = 566

 Score =  605 bits (1560), Expect = e-177
 Identities = 307/557 (55%), Positives = 397/557 (71%), Gaps = 1/557 (0%)

Query: 58  KLNKYSSRITEPKSQGGSQAILHGVGLSDEDLNKPQIGISSVWYEGNTCNMHLLRLSEAV 117
           K   +SS + +   +  S+A+LH VG +DED  KPQIG++S W     CNMH+ RL++  
Sbjct: 5   KNRPFSSPVVDGMERAPSRAMLHAVGFTDEDFQKPQIGVASTWNMVTPCNMHINRLADHA 64

Query: 118 KEGVKEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIP 177
            +GV   G     FNTI +SD ISMGT GM YSL SR++IADSIETVM  Q YDG ++I 
Sbjct: 65  IQGVDANGGKAVLFNTITISDGISMGTEGMKYSLVSREVIADSIETVMGCQGYDGLVAIG 124

Query: 178 GCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHYNGHSYDIISAFQAYGEYVNGSISDEDR 237
           GCDKNMPG ++A+ RLNRP++ VYGGTI PG + G   DI+S F+A G   N  I D+  
Sbjct: 125 GCDKNMPGCMIAIARLNRPAVFVYGGTILPGCHAGRKLDIVSVFEAVGARANDRIDDQTL 184

Query: 238 KNVVHNSCPGAGACGGMYTANTMASAIEAMGMCLPYSSSIPAENPLKLDECRLAGKYLLE 297
             +   + PG G+CGGMYTANTMASAIEA+GM LP SS+  A +  K  +C  AGK +L+
Sbjct: 185 HAIECEAIPGPGSCGGMYTANTMASAIEALGMSLPGSSAQAAVSEDKQKDCEEAGKAVLK 244

Query: 298 LLKMDLKPQNIITPQSLRNAMVVVMALGGSTNAVLHLIPIARSVGLELTLEDFQKVSDEV 357
           LL++DLKP++I+T ++  NA+ VV+ALGGSTN+ LHL+ +A + G+  TL+DF ++   V
Sbjct: 245 LLELDLKPRDIMTREAFENAVSVVIALGGSTNSALHLLAMASACGVSFTLDDFTRIGQRV 304

Query: 358 PFLADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGKTLAENVQNCPPLSE 417
           P LADLKPSG+Y M D+ +IGG   +++ LL+ G L+GDCLTVTGKTLAEN+ +  P  E
Sbjct: 305 PVLADLKPSGRYHMADLIEIGGIQPLMKMLLDAGLLNGDCLTVTGKTLAENLADVAPYPE 364

Query: 418 GQDIIRPLENPIKKTGHIQILQGNLAPEGSVAKITGKEGLYFSGPALVFEGEEAMLAAIS 477
           GQDIIR L+NPIK T H+ IL+GNLAP+G+VAKI+GKEGL F+G A VFEGEE  L  I 
Sbjct: 365 GQDIIRSLDNPIKPTSHLVILKGNLAPQGAVAKISGKEGLSFTGRARVFEGEEQALKRIL 424

Query: 478 ENPMNFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVV 537
           +  +  KG V+VIR EGPKGGPGM EML+PTSA+MG GLGKD AL+TDGRFSGG+HGFVV
Sbjct: 425 DGTVQ-KGDVIVIRYEGPKGGPGMREMLSPTSAVMGKGLGKDVALITDGRFSGGTHGFVV 483

Query: 538 GHICPEAQEGGPIGLVRNGDIIRIDVRERRIDVDVTDQEMEERRKNWTPPPYKATCGVLY 597
           GHI PEA  GGP+ +V++GD I ID   + + + + D E+++R   W  P  + T GVL 
Sbjct: 484 GHITPEAYMGGPLAIVQDGDTITIDAESQELHLHLADVEIQDRLSRWQKPEPRYTRGVLA 543

Query: 598 KYIKNVQSASRGCVTDE 614
           KY   V SAS G VTD+
Sbjct: 544 KYAALVSSASEGAVTDQ 560


Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1038
Number of extensions: 41
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 566
Length adjustment: 37
Effective length of query: 577
Effective length of database: 529
Effective search space:   305233
Effective search space used:   305233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_022949045.1 H035_RS0111095 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.11533.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11533.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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