Alignments for a candidate for ilvE in Methylohalobius crimeensis 10Ki

Align branched-chain amino acid aminotransferase 2; EC 2.6.1.42 (characterized)
to candidate WP_022949156.1 H035_RS0111660 branched-chain-amino-acid transaminase

Query= CharProtDB::CH_012531
         (298 letters)



>NCBI__GCF_000421465.1:WP_022949156.1
          Length = 292

 Score =  246 bits (628), Expect = 4e-70
 Identities = 133/281 (47%), Positives = 174/281 (61%), Gaps = 1/281 (0%)

Query: 7   FLNGEFVPKDEAKVSVYDHGYLYGDGVFEGIRVYSGNVFRLREHLVRLYESAKSIMLEIP 66
           ++NG  +P + A V V DHG LYGDGVFEGIR Y    FRL  HL RL +S  +I L +P
Sbjct: 8   WINGRLLPGNAATVPVTDHGLLYGDGVFEGIRFYRRRAFRLAAHLQRLADSCAAIRLTLP 67

Query: 67  YSLDEITNIVVETIRQNKLSNGYIRLVVSRGAGNLGLDPDSCTKPNVVVIAEQLSLFPQE 126
              + +T  V E I      +GY+RL+V+RG+G +GL+P+ CT+PNV++IA +L L  + 
Sbjct: 68  CPRERLTRAVEEVIAAFAEDDGYLRLIVTRGSGPMGLNPEDCTRPNVILIATRLQLVSER 127

Query: 127 YYEKGIPVVTVATRRNRPDVLSPQVKSLNYLNNILVRIEAKLAGVQEALMLNDQGYVAEG 186
              +G+ V+  ATRR   D L P++KSLNYLN IL R+EA  AG  EA+MLN  G +AEG
Sbjct: 128 KRREGVRVIIAATRRLPADGLDPRIKSLNYLNPILARMEAHQAGADEAVMLNRAGRIAEG 187

Query: 187 SGDNVFIVKGNKLITPPSSAGALEGITRNAILEIGEKLGYDVREELFTRHDVYVADEVFL 246
           + DNVF+V+  +L TPP   GAL GITR  I+ +    G  V E     +D+Y A E FL
Sbjct: 188 TADNVFVVRQGELATPPPVEGALAGITRELIMGLARDAGISVAEIPLAPYDLYTAGECFL 247

Query: 247 TGTAAEVIAVTTVDGRTIGLGQTGPHTNRLLEEFRKLVIED 287
           TGT AE+I V  VDGR +G    GP    L   F  LV E+
Sbjct: 248 TGTGAELIPVAEVDGRPMG-DCPGPVFLELRRRFHALVQEE 287


Lambda     K      H
   0.317    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 292
Length adjustment: 26
Effective length of query: 272
Effective length of database: 266
Effective search space:    72352
Effective search space used:    72352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_022949156.1 H035_RS0111660 (branched-chain-amino-acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.3472.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3472.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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