Alignments for a candidate for trpA in Methylohalobius crimeensis 10Ki

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_022949611.1 H035_RS0114095 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_000421465.1:WP_022949611.1
          Length = 273

 Score =  257 bits (656), Expect = 2e-73
 Identities = 139/267 (52%), Positives = 177/267 (66%), Gaps = 3/267 (1%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           MSRI   F  LK   R  LIPF+TAGDP PE  V ++HA+  AGAD++ELGVPFSDPMAD
Sbjct: 1   MSRIQTTFENLKREKRKALIPFITAGDPRPEFTVPMLHAMAAAGADILELGVPFSDPMAD 60

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GPVIQ ASERA+   V L  VL  VA FR+ D  TPIVLMGYLNP+E  GY  FA  A +
Sbjct: 61  GPVIQRASERALTHHVSLHQVLDMVAEFRRRDIQTPIVLMGYLNPLERMGYRAFAEAARK 120

Query: 121 AGVDGVLLVDCPLE--ESAVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSF 178
           AGVDGVL VD P E  E+ +L  L +AG+  I L APT+   R+ +   +  G+LYYVS 
Sbjct: 121 AGVDGVLTVDLPPEEAEAEMLPLLYEAGIDPIFLLAPTSTRGRIEKADAAGRGYLYYVSL 180

Query: 179 AGITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDR 238
            G+TGA HL   ++A +V ++RA A+ P+ VGFG+++A +A  +A  ADAVV+GSALV +
Sbjct: 181 KGVTGAGHLDLEEVARKVEEIRAAARLPIGVGFGVKNAETAAKMAQLADAVVVGSALVQK 240

Query: 239 L-AGATDAGEITRRTQAFLAPIRAALD 264
           +   + D   I     A L  +RAA+D
Sbjct: 241 VEENSGDPERIETAIVALLKEMRAAMD 267


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 221
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 273
Length adjustment: 25
Effective length of query: 241
Effective length of database: 248
Effective search space:    59768
Effective search space used:    59768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_022949611.1 H035_RS0114095 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.31998.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31998.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.