Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_022949934.1 H035_RS0115810 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000421465.1:WP_022949934.1
Length = 1080
Score = 1486 bits (3846), Expect = 0.0
Identities = 742/1072 (69%), Positives = 888/1072 (82%), Gaps = 1/1072 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDI++IL+LGAGPIVIGQACEFDYSG QACKALREEGYR++LVNSNPATIMTDP+
Sbjct: 1 MPKRTDIQTILLLGAGPIVIGQACEFDYSGTQACKALREEGYRIVLVNSNPATIMTDPDT 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD YIEP+ W+ V KIIEKERPDA+LPTMGGQTALNCAL+L R+GVLE++GV +IGA+
Sbjct: 61 ADRVYIEPVDWQTVAKIIEKERPDALLPTMGGQTALNCALDLHREGVLEKYGVELIGASK 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
AI+KAEDR F AM +IGL RSGIA+++EE+L V D+GFP IIRPS+T+GGSGGG
Sbjct: 121 QAIEKAEDRDLFRRAMGEIGLSVPRSGIAYSIEESLNVLEDIGFPAIIRPSYTLGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYNREEF EIC RGL+LS ELLI+ES++GWKE+EMEVVRD+NDNCIIVCSIEN D M
Sbjct: 181 IAYNREEFVEICERGLELSMVGELLIEESILGWKEFEMEVVRDRNDNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQ+MR+AS+AVL+EIGV+TGGSNVQFAVNP++GRL+VIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQVMRDASIAVLKEIGVDTGGSNVQFAVNPEDGRLVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG PASFEPSIDYVVTK+P
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGLIPASFEPSIDYVVTKVP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF A+DRLTTQMKSVGEVMAIGRT QES+QKALRGLE+G G K+ LD +
Sbjct: 361 RFTFEKFPDADDRLTTQMKSVGEVMAIGRTFQESMQKALRGLEIGVDGLTEKLDLDAEDT 420
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
++ REL+ G +R+WY+ADAFR G+++ + + + ID WFL QIEE+V+ E +
Sbjct: 421 RDRLVRELRSPGPERLWYVADAFRFGMTLTDIHDHSRIDPWFLAQIEEIVKAEHSLQAET 480
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
+ L A+ L + KR GFAD+RLAKL E E+R R ++ + PVYKR+D+CAAEFA+ T
Sbjct: 481 LATLKAEALYRFKRMGFADSRLAKLLDSAEGEVRAARHKHGIRPVYKRIDSCAAEFASST 540
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AY+YSTYEEECEA PS DR KI+VLGGGPNRIGQGIEFDYCCVHAS AL+EDG+ETIMVN
Sbjct: 541 AYLYSTYEEECEAAPS-DRRKIVVLGGGPNRIGQGIEFDYCCVHASFALKEDGFETIMVN 599
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTD+DTSDRLYFEP++LEDVLEI+++E+P+GVIVQYGGQTPLKLAR LEAAGVP
Sbjct: 600 CNPETVSTDFDTSDRLYFEPLSLEDVLEIIQLEQPEGVIVQYGGQTPLKLARDLEAAGVP 659
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
+IGT+PD+ID AEDRERFQ VERL LKQP N T ++E A+ A+E+ YPLVVRPSYVL
Sbjct: 660 IIGTTPDSIDLAEDRERFQKLVERLGLKQPENRTARSLEEAILCARELEYPLVVRPSYVL 719
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAMEIV +E DLRRY AVSVSN +PVLLD FLDDAVEVDVDA+ DG+ V +GG+ME
Sbjct: 720 GGRAMEIVLNEDDLRRYMVEAVSVSNQSPVLLDRFLDDAVEVDVDAVSDGKKVWVGGVME 779
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840
HIEQAG+HSGDSACS+P Y LS +Q+ +++QV+ LA L V GLMN QFA+K ++Y++
Sbjct: 780 HIEQAGIHSGDSACSVPPYELSGALQERLKEQVRCLAQALGVVGLMNTQFAIKEEDIYIL 839
Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900
EVNPRA+RTVP+VSKA G PLAK+AAR M G+SLAEQG+ +E +P YY+VKE V PF KF
Sbjct: 840 EVNPRASRTVPYVSKAVGFPLAKIAARCMVGQSLAEQGIERERVPHYYAVKEAVFPFIKF 899
Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
VDPLLGPEM+STGEVMGVG TF EA+AKAQ + + + + GR L+SVR+ DK ++V L
Sbjct: 900 SKVDPLLGPEMKSTGEVMGVGETFGEAYAKAQQAAGTCLVRSGRVLMSVRDRDKAQLVAL 959
Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020
A L+++GFEL AT GTA L AGI +VNKV +GRPHI D IKN E IINTT G+
Sbjct: 960 ARSLMERGFELVATRGTAHALQAAGIACEVVNKVGQGRPHIVDLIKNDEVGLIINTTEGK 1019
Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQI 1072
+AI DS +IRR ALQ+ + Y TTL G AT +AL+A T +V +Q++H Q+
Sbjct: 1020 KAIADSFLIRREALQHGITYTTTLAGAHATCLALSALHTGQVYCLQDLHRQL 1071
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3184
Number of extensions: 137
Number of successful extensions: 12
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1080
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1034
Effective search space: 1061918
Effective search space used: 1061918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_022949934.1 H035_RS0115810 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.3937.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3937.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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