Alignments for a candidate for ilvA in Hydrogenovibrio kuenenii DSM 12350

Align threonine ammonia-lyase (EC 4.3.1.19) (characterized)
to candidate WP_024851631.1 N745_RS0108155 threonine ammonia-lyase, biosynthetic

Query= BRENDA::P04968
         (514 letters)



>NCBI__GCF_000526715.1:WP_024851631.1
          Length = 507

 Score =  529 bits (1362), Expect = e-154
 Identities = 270/498 (54%), Positives = 355/498 (71%), Gaps = 2/498 (0%)

Query: 17  LRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEE 76
           LR VL  PVYE A+ TPL+K   +S RL N + +KRED QPV SFKLRGAY  +  L+EE
Sbjct: 6   LRQVLSVPVYEIAEQTPLEKAPLISQRLRNQVWLKREDLQPVFSFKLRGAYNRLLHLSEE 65

Query: 77  QKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFD 136
           +K  GVI ASAGNHAQGVA S+ ++G+KA IVMP  T  IKV++VR +GG V+L G  +D
Sbjct: 66  EKERGVIAASAGNHAQGVAMSATKMGIKATIVMPQTTPAIKVNSVRNWGGNVILCGDTYD 125

Query: 137 EAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGV 196
           EA   A EL +++  T++ P+D   VIAGQGT+ALELL+Q   +D +FVPVGGGGL AGV
Sbjct: 126 EAAKHAKELCEKEQLTYIAPYDDEHVIAGQGTIALELLRQSKDVDVIFVPVGGGGLIAGV 185

Query: 197 AVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQ 256
           + +IKQ+ P+ +V+ VE ED+AC+  AL AG  V L  VG+FA+GVAV ++G+  FR+ Q
Sbjct: 186 SAVIKQVSPKTRVVGVEPEDAACMTEALKAGERVVLDSVGIFADGVAVAQVGEIPFRIAQ 245

Query: 257 EYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSG 316
           E +D++ITV +D ICAA+KD+FED RA+AEP+GALALAGMKK++    +   ++  I+SG
Sbjct: 246 ECVDEMITVKTDEICAAVKDIFEDTRAIAEPAGALALAGMKKFVEEKGVSDRKMIAIMSG 305

Query: 317 ANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGG-RSVTEFNYRFADAK 375
           AN+NF  LR++SER E+GE+REA+ AVTIPE  GSF KFC+ LG  R++TEFNYRFAD +
Sbjct: 306 ANMNFDRLRHISERTEIGEKREAIFAVTIPETPGSFKKFCEFLGDRRAITEFNYRFADER 365

Query: 376 NACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERL 435
            A +FVGVR   G  E++++ + + + GY   D+SD+EMAKLH+RYMVGG       E L
Sbjct: 366 RAVVFVGVRTEGGYAEKEQLKKQMLEAGYQFEDMSDNEMAKLHLRYMVGGHAPGIQNEIL 425

Query: 436 YSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPD-FETRLNE 494
           Y F+FPE PGALL+FL  +   WNISLFHYR+HG  YGRVL   ++   + + FE  L  
Sbjct: 426 YRFQFPERPGALLQFLIQMSEEWNISLFHYRNHGAAYGRVLIGVQVPPEQHEAFECYLKS 485

Query: 495 LGYDCHDETNNPAFRFFL 512
           LGY    E  N  +  FL
Sbjct: 486 LGYPYDFEQENIGYDLFL 503


Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 679
Number of extensions: 26
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 507
Length adjustment: 35
Effective length of query: 479
Effective length of database: 472
Effective search space:   226088
Effective search space used:   226088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_024851631.1 N745_RS0108155 (threonine ammonia-lyase, biosynthetic)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.5613.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.