Alignments for a candidate for leuD in Haloglycomyces albus DSM 45210

Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_025272326.1 HALAL_RS0101600 3-isopropylmalate dehydratase small subunit

Query= SwissProt::Q8NQV7
         (197 letters)



>NCBI__GCF_000527155.1:WP_025272326.1
          Length = 205

 Score =  224 bits (570), Expect = 1e-63
 Identities = 110/194 (56%), Positives = 138/194 (71%), Gaps = 1/194 (0%)

Query: 4   FTTYTGVGVPLQRSNVDTDQIIPAVYLKRVTRTGFEDGLFSNWRQNDPNFVLNTDTYKNG 63
           F  +TG G PL+ SNVDTDQIIP+VYLKRVT+TGF D LF+ WR+ + +FVLN  TY++ 
Sbjct: 9   FRVHTGAGAPLRYSNVDTDQIIPSVYLKRVTKTGFADALFAEWREQE-DFVLNDATYQDA 67

Query: 64  SVLVAGPDFGTGSSREHAVWALMDYGFRAVFSSRFADIFRGNSGKAGMLTGIMEQSDIEL 123
           S+LVAG +FGTGSSREHAVWAL D GF  V + RF DIFR NS K G+LT  +  +D+E 
Sbjct: 68  SILVAGTEFGTGSSREHAVWALKDGGFAVVIAPRFGDIFRNNSLKNGLLTIELPYADVEQ 127

Query: 124 LWKLMEQTPGLELTVNLEKQIVTAGDVVISFEVDPYIRWRLMEGLDDAGLTLRKLDEIED 183
           LW  +E  P  ++ V+LE+Q V   D  + FE D + RWRL+EGLDD  LTLR    I +
Sbjct: 128 LWDAIEDKPDTQIIVDLERQRVEYADTAVEFEFDEFSRWRLLEGLDDIALTLRSESLIAE 187

Query: 184 YEAKRPAFKPRTNA 197
           YE +RP +KPRT A
Sbjct: 188 YELRRPTWKPRTQA 201


Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 196
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 205
Length adjustment: 21
Effective length of query: 176
Effective length of database: 184
Effective search space:    32384
Effective search space used:    32384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_025272326.1 HALAL_RS0101600 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.15454.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15454.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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