Alignments for a candidate for ilvH in Nocardiopsis lucentensis DSM 44048

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate WP_026127525.1 D471_RS0108135 acetolactate synthase small subunit

Query= BRENDA::P9WKJ3
         (168 letters)



>NCBI__GCF_000341125.1:WP_026127525.1
          Length = 174

 Score =  202 bits (513), Expect = 3e-57
 Identities = 101/160 (63%), Positives = 130/160 (81%)

Query: 5   THTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQIT 64
           +HTLSVLVED PG+LAR ++LFSRRGFNI+SL+V  TE    SRMTIVV+ +  PLEQ+T
Sbjct: 3   SHTLSVLVEDTPGILARASSLFSRRGFNIDSLSVSTTEYAGLSRMTIVVNCDLHPLEQVT 62

Query: 65  KQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLT 124
           KQLNKL+NV+KIVE D   SV REL L+KV+ADA SR+ V++   LFRA+V+DVSP+ + 
Sbjct: 63  KQLNKLVNVVKIVEMDTTASVQRELLLVKVKADASSRTHVLQTAELFRAHVVDVSPDVVV 122

Query: 125 VEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRGI 164
           +EATG+  KL+AL++ LEPFGIRE+ +SG+V+L RGPR I
Sbjct: 123 IEATGDPEKLDALVKNLEPFGIRELVKSGLVALGRGPRSI 162


Lambda     K      H
   0.315    0.131    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 174
Length adjustment: 18
Effective length of query: 150
Effective length of database: 156
Effective search space:    23400
Effective search space used:    23400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_026127525.1 D471_RS0108135 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.22532.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22532.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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