Alignments for a candidate for asp-kinase in Nocardiopsis lucentensis DSM 44048

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_026127686.1 D471_RS0113155 aspartate kinase

Query= BRENDA::P9WPX3
         (421 letters)



>NCBI__GCF_000341125.1:WP_026127686.1
          Length = 423

 Score =  572 bits (1473), Expect = e-167
 Identities = 289/423 (68%), Positives = 353/423 (83%), Gaps = 2/423 (0%)

Query: 1   MALVVQKYGGSSVADAERIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLLDLAQQVCPA 60
           MAL+VQKYGGSSVADAE I+RVA+RIVA KK G DVVVVVSAMGDTTD+LLDLA+QV P 
Sbjct: 1   MALIVQKYGGSSVADAEAIKRVAQRIVAQKKAGYDVVVVVSAMGDTTDELLDLAEQVSPM 60

Query: 61  PPPRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKIIDVTPGR 120
           PP RELDML+TAGER+S ALVAMAIE+LG  ARSFTGSQAGVITT  HGNAKIIDVTPGR
Sbjct: 61  PPARELDMLVTAGERMSMALVAMAIENLGYEARSFTGSQAGVITTSLHGNAKIIDVTPGR 120

Query: 121 LQTALEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVDGIF 180
           +Q A++EG + +VAGFQGVSQDTKD+T+LGRGGSDTTAVA+AAAL AD CEIY+DVDG+F
Sbjct: 121 IQEAVDEGAICIVAGFQGVSQDTKDITSLGRGGSDTTAVALAAALEADACEIYSDVDGVF 180

Query: 181 SADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYSDRPGTV 240
           +ADPRIV +AR++  V++EEMLEMAACG K+L LRCVEYARR+NIP+HVRSS+S +PGT 
Sbjct: 181 TADPRIVPSARRIPQVSYEEMLEMAACGTKILHLRCVEYARRYNIPLHVRSSFSQKPGTW 240

Query: 241 VVGSIKDVP-MEDPILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQN 299
           VV  +++   ME PI++GV+HDRSEAK+T+VG+PD  G AA +F+A+ADA++NIDM++QN
Sbjct: 241 VVSEVEESEGMEQPIISGVSHDRSEAKITVVGVPDKVGEAATIFKALADAEINIDMIVQN 300

Query: 300 VSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPG 359
           VS V   +TDI+FT  ++ G  AV  L  ++ ++GF  L YDD IGKVSLIGAGMRS+PG
Sbjct: 301 VSAVSTSRTDISFTVPKESGKVAVSSLKKVQEKVGFEALRYDDKIGKVSLIGAGMRSYPG 360

Query: 360 VTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLGGDE-EATVYAG 418
           VTA F +A+A  G N+E+ISTSEIRISV+  ++++D AV A H  F L  D+ EA VY G
Sbjct: 361 VTARFFDAVAGSGTNVEMISTSEIRISVIVEESQIDAAVQAAHSEFQLDADQVEAVVYGG 420

Query: 419 TGR 421
           TGR
Sbjct: 421 TGR 423


Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 534
Number of extensions: 21
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 423
Length adjustment: 32
Effective length of query: 389
Effective length of database: 391
Effective search space:   152099
Effective search space used:   152099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_026127686.1 D471_RS0113155 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.15690.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15690.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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