Alignments for a candidate for hisH in Methylosarcina fibrata AML-C10

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_026223250.1 A3OW_RS0101500 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_000372865.1:WP_026223250.1
          Length = 218

 Score =  223 bits (569), Expect = 2e-63
 Identities = 108/211 (51%), Positives = 144/211 (68%), Gaps = 3/211 (1%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           M+ + V+DYGMGNL S+A+AL+H  P A V  + +   I  ADR+V PG GA+ DCM +L
Sbjct: 1   MSSVAVIDYGMGNLHSIAKALQHAVPAATVICTSDRDAILNADRIVFPGVGAIRDCMNAL 60

Query: 61  RESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEE-GDTPGLGLLPGKVVRFDLEGMRQDD 119
            ++G+ + V +A+R KP  G+C+G Q L   SEE G T GLG+  G+VVRF  + ++  D
Sbjct: 61  NQAGLSEVVQKAARLKPFLGICLGMQALLTESEENGGTAGLGVFSGRVVRFP-DHLQDAD 119

Query: 120 GSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFAC 179
           G+  K+P MGWN VHQT  HPLW  I  N+ FYFVHSYYA P +++ V     Y   FAC
Sbjct: 120 GNTLKIPHMGWNQVHQTP-HPLWHNIPQNSRFYFVHSYYAQPEDASVVAATADYPEAFAC 178

Query: 180 AVARDNIFATQFHPEKSASAGLQLYRNFVHW 210
           A+A DN+FA QFHPEKS +AGLQL +NF++W
Sbjct: 179 AIAEDNVFAVQFHPEKSQAAGLQLLKNFLNW 209


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 165
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 218
Length adjustment: 22
Effective length of query: 190
Effective length of database: 196
Effective search space:    37240
Effective search space used:    37240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_026223250.1 A3OW_RS0101500 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.24292.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24292.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.