Alignments for a candidate for glnA in Methylosarcina fibrata AML-C10

Align glutamine synthetase (EC 6.3.1.2) (characterized)
to candidate WP_026223369.1 A3OW_RS0106170 glutamate--ammonia ligase

Query= BRENDA::P0A1P6
         (469 letters)



>NCBI__GCF_000372865.1:WP_026223369.1
          Length = 469

 Score =  694 bits (1792), Expect = 0.0
 Identities = 328/469 (69%), Positives = 387/469 (82%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           MS E+VL M+ +++VKFVD RF DT+GKEQHVT PAH ++ + FEEG MFDGSSI GWK 
Sbjct: 1   MSVENVLKMIKDNDVKFVDFRFCDTRGKEQHVTFPAHSIDEDTFEEGNMFDGSSIAGWKH 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATG 120
           INESDM+LMPD STAV+DPF+ D+TLI+RCDI+EP  +QGY+RDPRSIAKRAE YL+++G
Sbjct: 61  INESDMILMPDPSTAVMDPFYDDATLILRCDIIEPKNMQGYERDPRSIAKRAEAYLQSSG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 180
           IADT  FGPE EFF+FDD+R+GA +SGS   ID  E  WNS   Y  GN GHRPG+KGGY
Sbjct: 121 IADTAFFGPENEFFIFDDVRWGADMSGSFYKIDSEEAGWNSEKVYTDGNIGHRPGIKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPVPPVDS QD+RS MC V+E+MGL  E HHHEVATAGQ E+  +FNT+ KKADE+   K
Sbjct: 181 FPVPPVDSFQDMRSAMCQVLEEMGLRTEVHHHEVATAGQCEIGVKFNTLVKKADEVLALK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIG 300
           YVV N+AH +GKTATFMPKP+ GDNGSGMH H SLAK G NLF+GD Y GLSE ALYYIG
Sbjct: 241 YVVSNIAHAYGKTATFMPKPLVGDNGSGMHVHQSLAKGGVNLFTGDLYGGLSETALYYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVR 360
           G+IKHA+A+NA  N +TNSYKRLVPG+EAPVMLAYSARNRSASIRIP V +PK RRIEVR
Sbjct: 301 GIIKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPFVNNPKGRRIEVR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPD  ANPYL F+A+LMAGLDGI+NKIHPG+AMDK+LYDLP EEAKEIPQV  + ++AL 
Sbjct: 361 FPDSTANPYLAFSAMLMAGLDGIQNKIHPGDAMDKDLYDLPAEEAKEIPQVCHAFDQALE 420

Query: 421 ALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 469
           ALD DREFL  GGVFTD+ ID YI L+  +  R+RM+ HPVE+++YYS+
Sbjct: 421 ALDKDREFLTRGGVFTDDVIDGYIDLKMADVTRLRMSTHPVEYDMYYSL 469


Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 795
Number of extensions: 28
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_026223369.1 A3OW_RS0106170 (glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.8841.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8841.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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