Alignments for a candidate for argC in Methylosarcina fibrata AML-C10

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_026223550.1 A3OW_RS0112385 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>NCBI__GCF_000372865.1:WP_026223550.1
          Length = 343

 Score =  436 bits (1122), Expect = e-127
 Identities = 213/345 (61%), Positives = 263/345 (76%), Gaps = 2/345 (0%)

Query: 44  VIKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFSEP 103
           +I+ GIVGGTGYTGVELLRILA+H EV V+ +TSR++AG  V  +YP LRG+ +  FS P
Sbjct: 1   MIRAGIVGGTGYTGVELLRILALHEEVEVAVVTSRADAGSRVDAVYPGLRGYVEATFSAP 60

Query: 104 DVNVLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHESP 163
           DV +L  CD+VFFATP+G AM M  +L++ GV+++DLSADFR+KD   W+ WYGM H  P
Sbjct: 61  DVAILAECDVVFFATPNGTAMGMAEQLLARGVKIIDLSADFRIKDAGEWSRWYGMEHACP 120

Query: 164 EWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSGA 223
           +   +A+YGLPEV R+ I+ A+L+A PGCYPT+VQLGFLPL+E  L+D   LIAD KSG 
Sbjct: 121 DLIAEAIYGLPEVNREAIKTARLIACPGCYPTSVQLGFLPLIENDLIDSDHLIADVKSGV 180

Query: 224 SGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIPMIRG 283
           SGAGR+ ++  L  E GESFKAY   GHRHLPEI QGL  AAG  VG+TFVPHL PMIRG
Sbjct: 181 SGAGRKAELATLMSECGESFKAYAVGGHRHLPEISQGLKAAAGKAVGLTFVPHLTPMIRG 240

Query: 284 IEATLYAELKNPADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHRQE 343
           I ATLY +LK     D LQ+L+EQR+ DE FVDV+P GSHP+TR+VRG+N C++AL+R +
Sbjct: 241 IHATLYGQLK--TSVDDLQSLYEQRYRDELFVDVLPSGSHPDTRNVRGSNNCQIALYRPQ 298

Query: 344 QSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
               V+V SVIDNLVKGAAGQAVQNMN+MFG  E  GL+  AL P
Sbjct: 299 GGRTVVVLSVIDNLVKGAAGQAVQNMNLMFGFNEETGLKTVALYP 343


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 413
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 343
Length adjustment: 30
Effective length of query: 358
Effective length of database: 313
Effective search space:   112054
Effective search space used:   112054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_026223550.1 A3OW_RS0112385 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.29136.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29136.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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