Alignments for a candidate for argH in Methyloferula stellata AR4T

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_026595442.1 A3OQ_RS0103060 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_000385335.1:WP_026595442.1
          Length = 465

 Score =  433 bits (1113), Expect = e-126
 Identities = 222/457 (48%), Positives = 313/457 (68%), Gaps = 4/457 (0%)

Query: 5   NHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAATIK 64
           ++K+WGGRF    A  ++E  AS+ FD KLA  D+ GS+AHV ML + G++S+EDA  I 
Sbjct: 2   SNKMWGGRFAEKPAAIMQEINASVGFDYKLAAQDIAGSLAHVEMLAQTGLVSREDAEAIS 61

Query: 65  AGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMHLY 124
            GL ++  E ++G   F    EDIHMN+ES L AKIG  AG+LHTARSRNDQVA D  L+
Sbjct: 62  RGLAEIRGEIESGAFTFSPELEDIHMNIESRLAAKIGAAAGRLHTARSRNDQVAVDFRLW 121

Query: 125 LKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTRDS 184
           ++  +D +  +L +L+  L + A +H  ++MPG+THLQ AQP++FGHHL+AY  MF+RD 
Sbjct: 122 VRDTIDHLDAQLRDLQQALAEKAVEHAGSLMPGFTHLQTAQPVTFGHHLLAYVEMFSRDR 181

Query: 185 ERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEFLS 244
            RF       +  PLGAAALAGT+FPIDRE TA+ +GF  P +NSLD+V+DRDF+LE L+
Sbjct: 182 SRFCDARARLNECPLGAAALAGTSFPIDREATAKALGFDRPTANSLDSVADRDFVLEPLA 241

Query: 245 NASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGRVY 304
           +A+I  +H+SR  EE++ W + ++ FV L+D FSTGSSIMPQK+NPD AEL+RGKSGRV 
Sbjct: 242 DAAICAVHLSRFAEEIVLWTTAQFGFVRLTDQFSTGSSIMPQKRNPDAAELVRGKSGRVI 301

Query: 305 ANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAEST 364
             L GLL VMK LPLAY+KD+QEDKEG FD  +T+++++  +AGM+  +  + K M  + 
Sbjct: 302 GALAGLLIVMKGLPLAYSKDMQEDKEGAFDALQTLSLSIAAMAGMVRDLEPDLKKMKAAA 361

Query: 365 QKDFSNATELADYLASK-GMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLIEE 423
              ++ AT+LAD+L  +  MPFR+AH + G+L+   S     LQ + L   Q++   I +
Sbjct: 362 GDGYATATDLADWLVRELKMPFREAHHVTGRLVALASDRKIGLQKLSLNELQSVEPRITK 421

Query: 424 DVYETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460
           ++Y+ L    +V+ R S GGT  + V+   A+AK+ L
Sbjct: 422 EIYDVLGVENSVKSRTSYGGTAPKNVR---AQAKRWL 455


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 572
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 465
Length adjustment: 33
Effective length of query: 427
Effective length of database: 432
Effective search space:   184464
Effective search space used:   184464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_026595442.1 A3OQ_RS0103060 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.8135.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8135.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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