Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate WP_026595512.1 A3OQ_RS0105060 imidazole glycerol phosphate synthase subunit HisF
Query= BRENDA::Q5NMD6 (255 letters) >NCBI__GCF_000385335.1:WP_026595512.1 Length = 261 Score = 331 bits (849), Expect = 8e-96 Identities = 164/250 (65%), Positives = 200/250 (80%), Gaps = 1/250 (0%) Query: 3 LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62 L +RIIPCLDV DGRVVKG+NF DL DAGDPVE A YDAAGADELCFLDI+ASHE RG Sbjct: 2 LKSRIIPCLDVKDGRVVKGINFLDLRDAGDPVECAIAYDAAGADELCFLDITASHEDRGI 61 Query: 63 MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122 MLDVV RTAE CFMPLTVGGGVR ++D R LLLAGADKV++N+AAV+ V A++FG Sbjct: 62 MLDVVRRTAEACFMPLTVGGGVRVLDDIRKLLLAGADKVSINTAAVSDRAFVKAAAEKFG 121 Query: 123 AQCVVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTRD 181 QC+V AIDA+ WE++THGGR+PTGI+A+ +A + LGAGE+LLTSMD+DGT+ Sbjct: 122 NQCIVVAIDAKATAPGKWEIFTHGGRKPTGIDAIQYAREVVALGAGELLLTSMDRDGTKS 181 Query: 182 GYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAHE 241 G+DL LTR V D+V VPVIASGGVG L H+VEG+ +G A+A+LAASIFHFG +S+ EA Sbjct: 182 GFDLALTRAVTDAVSVPVIASGGVGTLAHLVEGIREGGATAVLAASIFHFGTFSIGEAKH 241 Query: 242 ALAKAGLTVR 251 +A+ G+ +R Sbjct: 242 YMAEHGVAIR 251 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 262 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 261 Length adjustment: 24 Effective length of query: 231 Effective length of database: 237 Effective search space: 54747 Effective search space used: 54747 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate WP_026595512.1 A3OQ_RS0105060 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.17985.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17985.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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