Alignments for a candidate for dapA in Maridesulfovibrio bastinii DSM 16055

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_027178063.1 G496_RS0103535 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::O67216
         (294 letters)



>NCBI__GCF_000429985.1:WP_027178063.1
          Length = 292

 Score =  280 bits (716), Expect = 3e-80
 Identities = 138/286 (48%), Positives = 190/286 (66%)

Query: 2   FQGSIVALITPFKEGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEF 61
           FQG+  AL+TPFK G++D EA   LIE+ ++ G D ++ CGTTGE+ T+T EE   VI  
Sbjct: 3   FQGAFTALVTPFKNGKIDEEAYRELIEWQIEQGIDGLVPCGTTGEAATMTHEEQGDVIRI 62

Query: 62  AVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTV 121
            V++ A RI VIAG G N T EAV+LT  AK+ GAD AL + PYYNKPT  GL  HFK +
Sbjct: 63  CVEQVAKRIPVIAGAGSNNTREAVNLTLLAKQAGADAALQITPYYNKPTPDGLLAHFKVL 122

Query: 122 AQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVKRLGESF 181
           A+E  +P I+YN+P RT +     T+ ++A E   ++  K++T NM + SE++++  E F
Sbjct: 123 AKESSMPFILYNVPGRTGLNAKPATIARIAREVPEVIGVKDATANMIQASEMIEQCPEGF 182

Query: 182 SVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFK 241
           +VLSGDD   LP+++LG  GVISV +N++P  + ++ RA  E D   A E+HY +  L +
Sbjct: 183 TVLSGDDFTVLPLLSLGGHGVISVVSNIVPAMMSDMCRAYREKDTATAMELHYKMQPLSR 242

Query: 242 VLFIETNPIPVKTACWMLGMCEKEFRLPLTEMSPENENKLREVLKK 287
            +FIETNPIPVKTA  M+G  E  FRLPL  + PENE KL+  L +
Sbjct: 243 SMFIETNPIPVKTALGMMGKMETSFRLPLVPLEPENEIKLKNALSE 288


Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 292
Length adjustment: 26
Effective length of query: 268
Effective length of database: 266
Effective search space:    71288
Effective search space used:    71288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_027178063.1 G496_RS0103535 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.18534.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18534.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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