Alignments for a candidate for ilvE in Maridesulfovibrio bastinii DSM 16055

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_027178111.1 G496_RS0103795 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000429985.1:WP_027178111.1
          Length = 307

 Score =  362 bits (930), Expect = e-105
 Identities = 172/302 (56%), Positives = 220/302 (72%)

Query: 3   MADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKR 62
           M  +  KIW DG+ + W +A++HVLTHTLHYG+GVFEG+RAY TADG +A+FRL+EH  R
Sbjct: 1   MVQKAEKIWFDGEFVPWDEAQVHVLTHTLHYGVGVFEGIRAYNTADGRSAVFRLREHVVR 60

Query: 63  LLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVA 122
           L +SAKI  + +PF  E +  A  E +R N  +  Y+RP++++G   +GV      I V 
Sbjct: 61  LFDSAKILGIKIPFSVEEIETAIIETLRINGHKEAYIRPLVFIGEGSMGVHPGTCPIRVC 120

Query: 123 IAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYD 182
           IA W WGAYLGED + KGIR+KTSSFTRHHVN  M +AKA G YVNS+LA  EA+ DGYD
Sbjct: 121 IATWYWGAYLGEDALEKGIRIKTSSFTRHHVNAMMTKAKACGNYVNSVLAKMEAVTDGYD 180

Query: 183 EALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRI 242
           EAL+LD  G+VSE +GEN F+V +G + T  L+S L GITRD+++ L +  G +V E+  
Sbjct: 181 EALMLDPQGFVSEATGENIFIVKDGVIKTTPLTSVLRGITRDSLMKLMKSLGYEVQEQLF 240

Query: 243 TRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYAN 302
           TRDE+YT DEAFF+GTAAEVTPIRE+DNR IG+G RGP+ EKLQ  FFDIV G +  Y+ 
Sbjct: 241 TRDELYTADEAFFSGTAAEVTPIREVDNRIIGAGRRGPVAEKLQKEFFDIVKGANSDYSE 300

Query: 303 WL 304
           WL
Sbjct: 301 WL 302


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 345
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 307
Length adjustment: 27
Effective length of query: 280
Effective length of database: 280
Effective search space:    78400
Effective search space used:    78400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_027178111.1 G496_RS0103795 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.2281.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2281.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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