Alignments for a candidate for argI in Maridesulfovibrio bastinii DSM 16055

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_027179275.1 G496_RS0110615 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000429985.1:WP_027179275.1
          Length = 325

 Score =  291 bits (745), Expect = 1e-83
 Identities = 145/297 (48%), Positives = 201/297 (67%), Gaps = 6/297 (2%)

Query: 3   VRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSFEA 62
           +RH L   D    EL  L+ R  ELKD + +    + LK + + ++FEKASTRTR+SFE 
Sbjct: 2   IRHMLRINDIPRSELGQLLLRAKELKDNKIKN---DVLKDKTVILIFEKASTRTRVSFEV 58

Query: 63  GMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKVPV 122
            + Q+GG  +F++P ++QLGR EP+ D+A+V+SR  D +++RTF    +   A H+ VPV
Sbjct: 59  AVHQMGGSTVFMTPNESQLGRSEPLEDTAQVLSRYADALVVRTFGQEKVRTLAEHASVPV 118

Query: 123 INGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRVAC 182
           IN L+D  HPCQ+L+DM + +E    +    VAWIGDGNNM  S+I AA+ F   L +A 
Sbjct: 119 INALTDKYHPCQVLSDMLSIYERTPDLSNVHVAWIGDGNNMAQSWINAAIYFPIYLTMAF 178

Query: 183 PEGYEPKAEFVALA---GDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRP 239
           P+GYEP  E +A A   G ++ +  DP+EA+ GAH V+TDV+ASMGQE+E   R+  F P
Sbjct: 179 PKGYEPDPEIIARALGMGAKINMSYDPKEAIKGAHYVNTDVFASMGQEEEQKKRMEAFMP 238

Query: 240 YQVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLE 296
           +QVN+ L+  A  D   MHCLPAHRGEE++ E+LD P+S+ +DQAENRLH QKA+LE
Sbjct: 239 FQVNSELMKLADPDCKVMHCLPAHRGEEVTAEVLDGPQSIIYDQAENRLHMQKAILE 295


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 260
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 325
Length adjustment: 27
Effective length of query: 278
Effective length of database: 298
Effective search space:    82844
Effective search space used:    82844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_027179275.1 G496_RS0110615 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.15692.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15692.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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