Alignments for a candidate for thrC in Maridesulfovibrio bastinii DSM 16055

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_027179313.1 G496_RS0110840 threonine synthase

Query= reanno::Miya:8501211
         (492 letters)



>NCBI__GCF_000429985.1:WP_027179313.1
          Length = 482

 Score =  692 bits (1785), Expect = 0.0
 Identities = 332/478 (69%), Positives = 391/478 (81%), Gaps = 1/478 (0%)

Query: 14  FPTARTRMEYVCLGCGERRGIDELLYTCPSCGGVYLLEDLDFDTLAEQRTGPEWRALFDA 73
           FP  R  + Y CLGCG +  IDEL YTCP CG V++L+D +F++L ++ +G EWR +FD 
Sbjct: 6   FPNYRGDLHYNCLGCGAKLAIDELYYTCPECGSVFILQDDNFESL-KKTSGEEWRKIFDE 64

Query: 74  RAATRTTALRGIFRFYELMAPVLEEEDIVYLGEGNTPIVEAAPVLRDAVGIPFAFKNDGQ 133
           RA+T+   LRGIFRFYEL APV+EEEDI+YLGEGNTPIV ++P L +  G+  AFKNDGQ
Sbjct: 65  RASTKNDKLRGIFRFYELFAPVIEEEDILYLGEGNTPIVSSSPALNEVTGVKTAFKNDGQ 124

Query: 134 NPSASFKDRGMACAFSYLKALVRKHGWDEVLTVCASTGDTSAAAALYASYVGGPVKSVVL 193
           NPSASFKDRGMACAFSYL ALVRK+ WD+VLTVCASTGDTSAAAALYASY+GGPVKSVVL
Sbjct: 125 NPSASFKDRGMACAFSYLNALVRKNKWDQVLTVCASTGDTSAAAALYASYLGGPVKSVVL 184

Query: 194 LPHGKVTPQQLSQPLGSGATVLEIPGVFDDCMKVVEHLAENYRVALLNSKNSWRILGQES 253
           LP GKVTPQQL+QPLGSGATVLEIPGVFDDCMKVVEHLA+NYRVALLNSKN+WRILGQES
Sbjct: 185 LPQGKVTPQQLAQPLGSGATVLEIPGVFDDCMKVVEHLADNYRVALLNSKNAWRILGQES 244

Query: 254 YAFEVAQWYGWDMKGQCVFVPIGNAGNVTAIMAGFLKLLRLGVIDALPRVIGVQSHHADP 313
           YAFEVAQWY WD+K +CVFVPIGNAGN+TAIMAGFLK+  LG+I+ LPR+ GVQS HADP
Sbjct: 245 YAFEVAQWYDWDLKDKCVFVPIGNAGNITAIMAGFLKMYDLGIIETLPRIFGVQSEHADP 304

Query: 314 VWRYYSQPDPATRTYAPVTVQPSVAQAAMIGNPVSFPRVKALADRFIAEGGERAFSVVQV 373
           V+RYY+  DP  R + PV V+PSVAQAAMIGNPVSFPRVK  A+R+ A  G++ F VV V
Sbjct: 305 VYRYYAVDDPKERNFEPVAVRPSVAQAAMIGNPVSFPRVKYFAERYEAISGKQGFQVVHV 364

Query: 374 TEQEIMDAMIRGNRHGHIACTQGGECLAGLIKARELGLVSQGEHAVLDATAHSLKFAGFQ 433
            EQ+I++ M+  N  GHIACTQGGEC AGL++AR+LGL++  E A+LD+TAH LKF GFQ
Sbjct: 365 REQDIIEGMLLANSKGHIACTQGGECFAGLLQARKLGLIADHEAAILDSTAHQLKFIGFQ 424

Query: 434 DMYFTNSFPPEYGVTPDASLANAPALVVSPEDKARLSPEAYTLAAAKAVVARLGLAKK 491
           +MY+ N FP EY +TPD+S  N P LV+ PE K   +P  YT  AA+ VV  LGL KK
Sbjct: 425 NMYYENEFPEEYEITPDSSRGNKPELVIEPEVKTSSTPAEYTTKAAEKVVKMLGLEKK 482


Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 740
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 482
Length adjustment: 34
Effective length of query: 458
Effective length of database: 448
Effective search space:   205184
Effective search space used:   205184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_027179313.1 G496_RS0110840 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.12379.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12379.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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