Alignments for a candidate for hisA in Maridesulfovibrio bastinii DSM 16055

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_027180513.1 G496_RS0118080 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::pseudo1_N1B4:Pf1N1B4_1624
         (245 letters)



>NCBI__GCF_000429985.1:WP_027180513.1
          Length = 243

 Score =  228 bits (582), Expect = 6e-65
 Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 1/236 (0%)

Query: 1   MLIIPAIDLKDGACVRLRQGRMEDSTVFSDDPVSMAAKWVEGGCRRLHLVDLNGAFEGQP 60
           M++ PA+D+KDG CVRL QG+ ++ TVFS DPV+ A  W   G   LH++DL+GAF G P
Sbjct: 1   MIVFPAVDIKDGQCVRLVQGQADEVTVFSSDPVAQANIWAGQGAEYLHVIDLDGAFSGMP 60

Query: 61  VNGEVVTAIAKRYPNLPIQIGGGIRSLETIEHYVKAGVSYVIIGTKAVKDPAFVAEACRA 120
            N E++  I     N+P+Q+GGGIR +ET   Y +AGV  +IIGT A++D    AE C+ 
Sbjct: 61  KNYELIKDICSEL-NIPVQLGGGIRDIETASRYFEAGVERLIIGTMALEDEKTFAELCKK 119

Query: 121 FPGKVIVGLDAKDGFVATDGWAEISTIQVIDLAKQFEADGVSAIVYTDIAKDGMMQGCNV 180
           FPG+V V LDA  G + + GW E + I V D+  + E  G + I+YTDI++DGM  G NV
Sbjct: 120 FPGRVGVSLDAVAGQLKSRGWVEDAGISVFDIIPRIEEAGAAFIIYTDISRDGMQTGVNV 179

Query: 181 SYTAALAAATKIPVIASGGIHNLGDIKSLLDAKAPGIIGAITGRAIYEGTLDVAEA 236
              A L   TK+PVIA+GG+  L D+K+L    + G+ GAI+G+AIY G+LD AEA
Sbjct: 180 RALADLCGKTKLPVIAAGGVATLDDVKNLYPLTSKGLEGAISGKAIYTGSLDFAEA 235


Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 219
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 243
Length adjustment: 24
Effective length of query: 221
Effective length of database: 219
Effective search space:    48399
Effective search space used:    48399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate WP_027180513.1 G496_RS0118080 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.21236.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21236.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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