Alignments for a candidate for gatA in Maridesulfovibrio bastinii DSM 16055

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_027180517.1 G496_RS0118105 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000429985.1:WP_027180517.1
          Length = 487

 Score =  526 bits (1354), Expect = e-154
 Identities = 259/476 (54%), Positives = 350/476 (73%), Gaps = 6/476 (1%)

Query: 3   LFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAV 62
           L++  +TE+ +LI   EI ++D V    +RI + +  ++A LA + + A   A E+D   
Sbjct: 4   LYEKSLTEISELIASGEITVTDAVKSCLERIDSTEPAIEALLAQNRDEALKQAAEMD--A 61

Query: 63  DGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKL 122
            G  +   L+G+P+ +KD + TK ++TTC SKILE+F P YDAT + +L++A A+ + K 
Sbjct: 62  QGPDKSKPLWGVPVIIKDVLATKNIKTTCGSKILEDFTPFYDATAITKLKEAGAIILAKA 121

Query: 123 NMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQP 182
           NMDEFAMGS+TENSAYK T+NPWN D VPGGSSGGS A VAAG+   +LG+DTGGSIR P
Sbjct: 122 NMDEFAMGSTTENSAYKTTRNPWNTDRVPGGSSGGSGATVAAGQAFAALGTDTGGSIRLP 181

Query: 183 ASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSAN 242
           ASFCG+VG+KPTYGRVSRYG++A+ SSLDQIGP+TRTVED+A +L  ISG DK DSTS  
Sbjct: 182 ASFCGIVGVKPTYGRVSRYGMIAYGSSLDQIGPMTRTVEDSARILNVISGHDKRDSTSVE 241

Query: 243 VDVPDFLSSL--TGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLP 300
            DVPDF++ L    D+ GL + +P+EY GEG+ +E  E+  AA+K  E LGA    V L 
Sbjct: 242 CDVPDFVAELKKRTDLSGLTLGLPEEYWGEGLSEEVSEACKAAIKKAEELGAKTVPVKLS 301

Query: 301 HSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIM 360
            ++YA+ATYY+++ +EAS+NL+RFDGIRYGYR   AD LIDLY ++R E FG+EV+RRI+
Sbjct: 302 MTEYAIATYYIIAMAEASSNLSRFDGIRYGYRNKEADELIDLYTKSRTEAFGDEVQRRII 361

Query: 361 LGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLT 420
           +GT+ LS+GYYDAYYKKA ++R ++++DFE  FE  D+I+GP  PT AF +G+ T DPL 
Sbjct: 362 IGTYVLSAGYYDAYYKKAAQIRRILRQDFEKAFESCDLILGPACPTTAFPVGDFTSDPLQ 421

Query: 421 MYANDILTIPVNLAGVPGISVPCGLA--DGLPLGLQIIGKHFDESTVYRVAHAFEQ 474
           MY  DI TI +NLAG+PG+S+P GL    G+P+GLQI+   FDEST+ + A+  E+
Sbjct: 422 MYLMDIFTISLNLAGLPGMSLPVGLGKESGMPVGLQIMAPAFDESTMLQAANILEK 477


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 617
Number of extensions: 30
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 487
Length adjustment: 34
Effective length of query: 451
Effective length of database: 453
Effective search space:   204303
Effective search space used:   204303
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_027180517.1 G496_RS0118105 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.17388.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17388.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.