Alignments for a candidate for leuB in Maridesulfovibrio bastinii DSM 16055

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_027180539.1 G496_RS0118215 3-isopropylmalate dehydrogenase

Query= BRENDA::P93832
         (405 letters)



>NCBI__GCF_000429985.1:WP_027180539.1
          Length = 355

 Score =  437 bits (1125), Expect = e-127
 Identities = 223/354 (62%), Positives = 275/354 (77%), Gaps = 2/354 (0%)

Query: 45  ITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAK 104
           I ++PGDGIGPE+V    NVL   G   G  F   E+ IGGAA+D  GVPLP+ET+ A K
Sbjct: 3   ICVMPGDGIGPEIVEQGLNVLNVIGEKFGHTFETEEVLIGGAAIDAKGVPLPDETVEACK 62

Query: 105 ESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREV 164
            +DAVLLGA+GG KWD  +  +RPE+GLL IR AL +FANLRPA++ PQL DA  L+ ++
Sbjct: 63  AADAVLLGAVGGPKWDTIDPSIRPERGLLGIRKALGLFANLRPASLFPQLKDACFLRPDI 122

Query: 165 AE-GVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR 223
            E G+D+MVVRELTGGIYFGEP+G +  ++G++ GFNT VY   EI RIA++AFETARKR
Sbjct: 123 VEKGIDVMVVRELTGGIYFGEPKG-EGEKDGQKYGFNTMVYYEEEIRRIAKIAFETARKR 181

Query: 224 RGKLCSVDKANVLEASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTN 283
           + ++CSVDKANVL+ S +WR  V  ++ EYPDVEL+H+YVDNAAMQLVRDP QFD IVT 
Sbjct: 182 KKRVCSVDKANVLDVSRVWRAIVIEVSKEYPDVELTHLYVDNAAMQLVRDPSQFDVIVTG 241

Query: 284 NIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAA 343
           N+FGDILSDEAS+ITGSIGMLPSAS+  + PG+FEPIHGSAPDIAG+DKANPLATILS A
Sbjct: 242 NLFGDILSDEASVITGSIGMLPSASVGAANPGIFEPIHGSAPDIAGEDKANPLATILSIA 301

Query: 344 MLLKYGLGEEKAAKRIEDAVLVALNNGFRTGDIYSAGTKLVGCKEMGEEVLKSV 397
           M+L+Y    +K A+ IE AV   L++G RTGDI   G  LVGCK MGE V+K++
Sbjct: 302 MMLRYAFNLDKEAECIEAAVEKTLSSGLRTGDIMDEGGTLVGCKAMGEAVIKNL 355


Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 481
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 355
Length adjustment: 30
Effective length of query: 375
Effective length of database: 325
Effective search space:   121875
Effective search space used:   121875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_027180539.1 G496_RS0118215 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.9992.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9992.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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