Alignments for a candidate for ilvE in Dechloromonas agitata is5

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_027457136.1 K420_RS0105240 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000519045.1:WP_027457136.1
          Length = 305

 Score =  350 bits (898), Expect = e-101
 Identities = 171/303 (56%), Positives = 218/303 (71%), Gaps = 1/303 (0%)

Query: 3   MADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKR 62
           M DR+  IW+DG+ +   +AK+ VLTHTLHYG G FEG+RAY+TA  G A+FRL EH +R
Sbjct: 1   MQDRNSLIWLDGQWLPASEAKVSVLTHTLHYGYGCFEGIRAYETA-AGPALFRLPEHLRR 59

Query: 63  LLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVA 122
           L +SA+I  +D+PFD  TL  A  EVV  N L S Y+RP++++G EKLGV   G   HV 
Sbjct: 60  LEDSARILAIDMPFDRSTLTEACREVVARNGLNSAYVRPLVFLGDEKLGVDPAGAKTHVM 119

Query: 123 IAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYD 182
           +AAWPWG YLG   +  GIRV+ SS+ RHH NV M RAKA   Y NSIL+ +EA  DGYD
Sbjct: 120 VAAWPWGTYLGGAALQTGIRVRVSSYARHHPNVQMCRAKAISAYANSILSVREARRDGYD 179

Query: 183 EALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRI 242
           EA+LLD +GYV+EGS EN F+V +G+L  P+ +S LDGITR T  TLAR+AG+ V  KR+
Sbjct: 180 EAILLDTEGYVAEGSSENLFIVRDGELLEPETTSALDGITRRTASTLAREAGLSVRAKRL 239

Query: 243 TRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYAN 302
           TRDEVY  DE FFTGTAAE+TP+ E+D R IG+G  GPIT +LQ  +F  V G+ +++ +
Sbjct: 240 TRDEVYCADEVFFTGTAAEITPVVEVDARRIGNGQPGPITRRLQQAYFAAVRGEDERHDD 299

Query: 303 WLT 305
           WLT
Sbjct: 300 WLT 302


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 328
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 305
Length adjustment: 27
Effective length of query: 280
Effective length of database: 278
Effective search space:    77840
Effective search space used:    77840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_027457136.1 K420_RS0105240 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.14556.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14556.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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