Alignments for a candidate for proC in Dechloromonas agitata is5

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_027457292.1 K420_RS0106060 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>NCBI__GCF_000519045.1:WP_027457292.1
          Length = 270

 Score =  217 bits (553), Expect = 2e-61
 Identities = 122/270 (45%), Positives = 166/270 (61%), Gaps = 5/270 (1%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           +I F+G GNMA +LIGG+  QG  A+ I   D GAE RAK++  + +    S   A    
Sbjct: 2   KIVFLGGGNMANALIGGMVKQGFTASDIDVIDLGAEARAKLSASYGVTCHASAVTAPTAP 61

Query: 65  DVVVLSVKPQAMKAVCQALAPALKP--EQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNT 122
           D++VL+VKPQ MK   +A+AP +      L++SIAAG+  A+L  WLG  R +VRCMPNT
Sbjct: 62  DILVLAVKPQQMK---EAVAPLVGKLGNALVISIAAGLDMAALSRWLGGHRTIVRCMPNT 118

Query: 123 PALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFL 182
           PAL+  G +GL A  +V+A Q   A ++L AVG  +W+DDEA+ID VTA+SGSGPAY FL
Sbjct: 119 PALIGAGITGLCALPEVTAEQRAAADRVLKAVGTTVWIDDEAKIDGVTALSGSGPAYVFL 178

Query: 183 LMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIK 242
            ++A+  A  +LG + E   +L ++T  GAA +A  S    + LR RVTS  GTTEAA+K
Sbjct: 179 FIEALQQAAAELGFTPEQGRQLAIETVQGAAALAAQSSEPASILRERVTSKGGTTEAALK 238

Query: 243 SFQANGFEALVEQALNAASQRSAELAEQLG 272
                G +  +     AA  R  EL + LG
Sbjct: 239 VMAERGVKEGIVAGCKAAEARGQELGKLLG 268


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 191
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 270
Length adjustment: 25
Effective length of query: 248
Effective length of database: 245
Effective search space:    60760
Effective search space used:    60760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_027457292.1 K420_RS0106060 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.20837.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20837.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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