Alignments for a candidate for dapC in Dechloromonas agitata is5

Align N-succinyldiaminopimelate-aminotransferase (EC 2.6.1.17) (characterized)
to candidate WP_027458624.1 K420_RS0114010 succinyldiaminopimelate transaminase

Query= metacyc::MONOMER-6501
         (397 letters)



>NCBI__GCF_000519045.1:WP_027458624.1
          Length = 396

 Score =  434 bits (1117), Expect = e-126
 Identities = 230/397 (57%), Positives = 275/397 (69%), Gaps = 6/397 (1%)

Query: 1   MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60
           MNP L  L PYPFEKLRAL A    P  +   I LSIGEP+HA P  +  A+A  L GL+
Sbjct: 1   MNPHLAHLQPYPFEKLRALFAGV-TPNPEYKEIKLSIGEPQHATPQFIMDALAGGLKGLA 59

Query: 61  VYPSTKGEPALRQAISQWLSRRYSIPAPDPESEVLPVLGSREALFAFAQTVIDPSAG--A 118
            YP+T+G P LRQAI+ W  RRY +   +PE+E+LPV GSREALF+FAQTVIDPS G   
Sbjct: 60  NYPTTQGTPMLRQAIAAWCDRRYGLFL-NPETEILPVNGSREALFSFAQTVIDPSRGHVP 118

Query: 119 LVVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSPGNP 178
           +VV PNPFYQIYEGAA L+GA P ++N  P  DF    G++ +  W R QL +VCSPGNP
Sbjct: 119 IVVSPNPFYQIYEGAAYLSGAEPRFLNNLPENDFAFDYGQLTEAEWARVQLFYVCSPGNP 178

Query: 179 AGNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYTNLV 238
            G V+SL++W+TLF LSD++GF+IA+ ECYSEIY DE  PP+G LQAA+ LGR     LV
Sbjct: 179 TGKVLSLDDWKTLFALSDKYGFIIASDECYSEIYFDEANPPIGGLQAAKLLGRSN-ERLV 237

Query: 239 AFSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAWS-MRRMCR 297
            FSSLSKRSNVPGMRSGFVAGD  +L +FLLYRTYHG AM+P V  AS+AAW+    +  
Sbjct: 238 MFSSLSKRSNVPGMRSGFVAGDEKILKKFLLYRTYHGCAMAPPVQTASVAAWNDEAHVLD 297

Query: 298 KTAQYRAKFEAVLPILQNVLDVRAPQASFYLWAGTPGSDTAFARELYGRTGVTVLPGSLL 357
              QYR KF A  P +  VL    P ASFYLWA TP +DT FAR L     V VLPGS L
Sbjct: 298 NRNQYRDKFAACTPQIAEVLGTGMPDASFYLWARTPIADTDFARLLLEHYNVVVLPGSFL 357

Query: 358 AREAHNANPGQGRIRIALVAPLDQCVQAAERIAHFAR 394
           ARE+   NPG   IRIALVA  ++C++A  RI  FA+
Sbjct: 358 ARESQGVNPGANFIRIALVAGQEECLEATRRIRQFAQ 394


Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 565
Number of extensions: 25
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 396
Length adjustment: 31
Effective length of query: 366
Effective length of database: 365
Effective search space:   133590
Effective search space used:   133590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_027458624.1 K420_RS0114010 (succinyldiaminopimelate transaminase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.32593.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32593.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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