Alignments for a candidate for cmutase in Dechloromonas agitata is5

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_027458972.1 K420_RS0116245 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000519045.1:WP_027458972.1
          Length = 363

 Score =  368 bits (945), Expect = e-106
 Identities = 185/358 (51%), Positives = 245/358 (68%), Gaps = 4/358 (1%)

Query: 7   LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
           L  +R  ID +D  +L L++ERARCAQ V  +K       +    YRPEREA VL+ + +
Sbjct: 9   LAGVRADIDRIDGELLKLLNERARCAQRVGAIKAEH---GDAGYIYRPEREAQVLRRLQD 65

Query: 67  LNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAA 126
            N GPL NE +   FRE+MS+CL+LE+PL +A+LGP GTFS++AA KHFGH+    P  +
Sbjct: 66  TNPGPLANENITFFFREVMSACLSLEEPLGIAFLGPLGTFSESAATKHFGHAARLLPQTS 125

Query: 127 IDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETT 186
           ID+VFREV AG  ++ VVPVENSTEGAV  T+D  L   + ICGEV LRIH +LL  ET 
Sbjct: 126 IDDVFREVEAGHAHYAVVPVENSTEGAVGRTMDLLLSTPLRICGEVVLRIHQNLLSRETD 185

Query: 187 KTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQ 246
            + +I ++YSHAQSLAQC +WL+   PN +R++V SNA AA++   E  +AAIAG+ AA 
Sbjct: 186 FS-QIAKVYSHAQSLAQCHEWLNRMLPNAQRISVGSNAQAAQKAAEEPGTAAIAGEAAAA 244

Query: 247 LYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHSN 306
            Y L KL E IED P N+TRFL++G  +  P+G DKTS+I+S  N+ GALHELL P  + 
Sbjct: 245 RYELPKLVENIEDEPNNTTRFLVLGKHDAGPSGRDKTSLIMSAPNRTGALHELLQPLSAA 304

Query: 307 GIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKAV 364
           G+ + R+E+RP+R+  W YVF++D  GH  +P IK  L+K+   A  LK LGSYP AV
Sbjct: 305 GVSMCRLESRPARNALWEYVFYVDIEGHRDEPAIKAALDKLAASAAYLKTLGSYPVAV 362


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 362
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 363
Length adjustment: 29
Effective length of query: 336
Effective length of database: 334
Effective search space:   112224
Effective search space used:   112224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_027458972.1 K420_RS0116245 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.27534.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27534.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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