Alignments for a candidate for dapC in Dechloromonas agitata is5

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_027458973.1 K420_RS0116250 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::Q9SHP0
         (422 letters)



>NCBI__GCF_000519045.1:WP_027458973.1
          Length = 361

 Score =  387 bits (995), Expect = e-112
 Identities = 198/361 (54%), Positives = 259/361 (71%), Gaps = 4/361 (1%)

Query: 62  RVINFAAGPAALPENVLLKAQSDLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 121
           R+ NF+AGPAALPE VL +AQ +L +W GSG SVMEMSHRGKEF SII++AE+DLR+L+ 
Sbjct: 3   RIHNFSAGPAALPEEVLKQAQEELLDWHGSGCSVMEMSHRGKEFTSIIEQAEADLRELMG 62

Query: 122 IPSEYSVLFLQGGATTQFAALPLNLCKSDDSVDYIVTGSWGDKAFKEAKKYCNPKVIWSG 181
           IP +Y VLFLQGGAT QFA +P+NL  +  S DYIVTGSW  KAFKEA++  N +   + 
Sbjct: 63  IPEQYKVLFLQGGATQQFAQIPMNLL-AGRSADYIVTGSWSKKAFKEAQRIGNVRCAATT 121

Query: 182 KSEKYTKVPTFDGLEQSSDAKYLHICANETIHGVEFKDYPLVENPDGV-LIADMSSNFCS 240
           ++  +T++P  + ++    A YLH+C NETIHGVE     + +   GV L+ADMSS+  S
Sbjct: 122 EASNFTRLPVAEEIKLDPFAAYLHVCTNETIHGVEIPAERIADT--GVPLVADMSSHILS 179

Query: 241 KPVDVSKFGVIYAGAQKNVGPSGVTIVIIRKDLIGNARDITPVMLDYKIHDENSSLYNTP 300
           +PV V KFG+IYAGAQKN+GPSGVT+VII +DL+G A    P ++DY +  EN S+ NTP
Sbjct: 180 RPVPVEKFGLIYAGAQKNIGPSGVTLVIIHRDLLGMAPLTIPTVMDYAVMAENGSMLNTP 239

Query: 301 PCFGIYMCGLVFDDLLEQGGLKEVEKKNQRKAELLYNAIDESRGFFRCPVEKSVRSLMNV 360
           P +GIY+ GLVF  L  QGGL+ + + N  KA +LY  ID+S GF+R PV+   RS MNV
Sbjct: 240 PTYGIYIAGLVFQWLKRQGGLEGMARINAEKARILYACIDQSGGFYRNPVDADCRSAMNV 299

Query: 361 PFTLEKSELEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAR 420
           PF L   +L+A+F+ E+    +  LKGH+SVGGMRASIYNA+ L  V+ LVAFM +F  R
Sbjct: 300 PFVLANPDLDAKFLAESKAAGLASLKGHKSVGGMRASIYNAVSLESVQALVAFMNEFAKR 359

Query: 421 H 421
           +
Sbjct: 360 N 360


Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 412
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 361
Length adjustment: 31
Effective length of query: 391
Effective length of database: 330
Effective search space:   129030
Effective search space used:   129030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_027458973.1 K420_RS0116250 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.32580.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32580.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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